Dr. Miriam Menzel
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A Jones matrix formalism for simulating three-dimensional polarized light imaging of brain tissue
M Menzel, K Michielsen, H De Raedt, J Reckfort, K Amunts, M Axer
Journal of the Royal Society Interface 12 (111), 20150734, 2015
Understanding fiber mixture by simulation in 3D polarized light imaging
M Dohmen, M Menzel, H Wiese, J Reckfort, F Hanke, U Pietrzyk, K Zilles, ...
NeuroImage 111, 464-475, 2015
Diattenuation Imaging reveals different brain tissue properties
M Menzel, M Axer, K Amunts, H De Raedt, K Michielsen
Scientific reports 9 (1), 1-12, 2019
Diattenuation of brain tissue and its impact on 3D polarized light imaging
M Menzel, J Reckfort, D Weigand, H Köse, K Amunts, M Axer
Biomedical optics express 8 (7), 3163-3197, 2017
Toward a high-resolution reconstruction of 3D nerve fiber architectures and crossings in the brain using light scattering measurements and finite-difference time-domain simulations
M Menzel, M Axer, H De Raedt, I Costantini, L Silvestri, FS Pavone, ...
Physical Review X 10 (2), 021002, 2020
Autofluorescence enhancement for label-free imaging of myelinated fibers in mammalian brains
I Costantini, E Baria, M Sorelli, F Matuschke, F Giardini, M Menzel, ...
Scientific reports 11 (1), 1-11, 2021
Finite-difference time-domain simulation for three-dimensional polarized light imaging
M Menzel, M Axer, HD Raedt, K Michielsen
International Workshop on Brain-Inspired Computing, 73-85, 2015
Scattered Light Imaging: Resolving the substructure of nerve fiber crossings in whole brain sections with micrometer resolution
M Menzel, JA Reuter, D Gräßel, M Huwer, P Schlömer, K Amunts, M Axer
NeuroImage 233, 117952, 2021
Coherent Fourier scatterometry reveals nerve fiber crossings in the brain
M Menzel, SF Pereira
Biomedical Optics Express 11 (8), 4735-4758, 2020
SLIX: A Python package for fully automated evaluation of Scattered Light Imaging measurements on brain tissue
JA Reuter, M Menzel
Journal of Open Source Software 5 (54), 2675, 2020
FAConstructor: an interactive tool for geometric modeling of nerve fiber architectures in the brain
JA Reuter, F Matuschke, M Menzel, N Schubert, K Ginsburger, C Poupon, ...
International journal of computer assisted radiology and surgery 14 (11 …, 2019
Finite-difference time-domain simulations assisting to reconstruct the brain's nerve fiber architecture by 3D polarized light imaging
M Menzel, K Amunts, S Weßel, KF Michielsen
Fachgruppe Physik, 2018
Scatterometry Measurements with Scattered Light Imaging Enable New Insights into the Brain's Nerve Fiber Architecture
M Menzel, M Ritzkowski, JA Reuter, D Gräßel, K Amunts, M Axer, 2021
Finite-difference time-domain simulations of transmission microscopy enable a better interpretation of 3D nerve fiber architectures in the brain
M Menzel, M Axer, H De Raedt, I Costantini, L Silvestri, FS Pavone, ...
arXiv preprint arXiv:1806.07157, 2018
GORDA: Graph-Based Orientation Distribution Analysis of SLI Scatterometry Patterns of Nerve Fibres
E Vaca, M Menzel, K Amunts, M Axer, T Dickscheid
2022 IEEE 19th International Symposium on Biomedical Imaging (ISBI), 1-5, 2022
Light scattering measurements enable an improved reconstruction of nerve fiber crossings
M Menzel, M Huwer, P Schlömer, K Amunts, M Axer
Optics and the Brain, BW2C. 3, 2020
Independent component analysis for noise and artifact removal in three-dimensional polarized light imaging
K Benning, M Menzel, JA Reuter, M Axer
International Workshop on Brain-Inspired Computing, 90-102, 2019
Polarized Light Imaging and Two-Photon Fluorescence Microscopy correlative approach for 3D reconstruction of the orientation of myelinated fibers
I Costantini, M Menzel, L Silvestri, N Schubert, M Axer, K Amunts, ...
Optics and the Brain, BrW4B. 5, 2017
Simulation-based validation of the physical model in 3D polarized light imaging
M Menzel, M Dohmen, H De Raedt, K Michielsen, K Amunts, M Axer
Novel Techniques in Microscopy, JT3A. 33, 2015
Simulation and modeling for the reconstruction of nerve fibers in the brain by 3D Polarized Light Imaging
M Menzel
Jülich Supercomputing Center, 2014
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