Dave Ussery
Dave Ussery
Professor of Bioinformatics, UAMS
Bestätigte E-Mail-Adresse bei uams.edu - Startseite
Titel
Zitiert von
Zitiert von
Jahr
RNAmmer: consistent and rapid annotation of ribosomal RNA genes
K Lagesen, P Hallin, EA Rødland, HH Stærfeldt, T Rognes, DW Ussery
Nucleic acids research 35 (9), 3100-3108, 2007
39102007
The genome sequence of Schizosaccharomyces pombe
V Wood, R Gwilliam, MA Rajandream, M Lyne, R Lyne, A Stewart, ...
nature 415 (6874), 871-880, 2002
18342002
The minimum information about a genome sequence (MIGS) specification
D Field, G Garrity, T Gray, N Morrison, J Selengut, P Sterk, T Tatusova, ...
Nature biotechnology 26 (5), 541-547, 2008
11602008
Multilocus sequence typing of total-genome-sequenced bacteria
MV Larsen, S Cosentino, S Rasmussen, C Friis, H Hasman, RL Marvig, ...
Journal of clinical microbiology 50 (4), 1355-1361, 2012
11482012
Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88
HJ Pel, JH De Winde, DB Archer, PS Dyer, G Hofmann, PJ Schaap, ...
Nature biotechnology 25 (2), 221-231, 2007
11102007
Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes
HB Nielsen, M Almeida, AS Juncker, S Rasmussen, J Li, S Sunagawa, ...
Nature biotechnology 32 (8), 822-828, 2014
6282014
Comparison of 61 Sequenced Escherichia coli Genomes
O Lukjancenko, TM Wassenaar, DW Ussery
Microbial ecology 60 (4), 708-720, 2010
5162010
Insights from 20 years of bacterial genome sequencing
M Land, L Hauser, SR Jun, I Nookaew, MR Leuze, TH Ahn, T Karpinets, ...
Functional & integrative genomics 15 (2), 141-161, 2015
5082015
The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium
C Kröger, SC Dillon, ADS Cameron, K Papenfort, SK Sivasankaran, ...
Proceedings of the National Academy of Sciences 109 (20), E1277-E1286, 2012
3692012
A DNA structural atlas for Escherichia coli
AG Pedersen, LJ Jensen, S Brunak, HH Stærfeldt, DW Ussery
Journal of molecular biology 299 (4), 907-930, 2000
2422000
The chromatin‐associated protein H‐NS alters DNA topology in vitro.
AE Tupper, TA Owen‐Hughes, DW Ussery, DS Santos, DJ Ferguson, ...
The EMBO journal 13 (1), 258-268, 1994
2411994
On the total number of genes and their length distribution in complete microbial genomes
M Skovgaard, LJ Jensen, S Brunak, D Ussery, A Krogh
TRENDS in Genetics 17 (8), 425-428, 2001
2372001
Ten years of bacterial genome sequencing: comparative-genomics-based discoveries
TT Binnewies, Y Motro, PF Hallin, O Lund, D Dunn, T La, DJ Hampson, ...
Functional & integrative genomics 6 (3), 165-185, 2006
2112006
The complete genome sequence and analysis of the epsilonproteobacterium Arcobacter butzleri
WG Miller, CT Parker, M Rubenfield, GL Mendz, MMSM Wösten, ...
PloS one 2 (12), e1358, 2007
2012007
RNammer: consistent annotation of rRNA genes in genomic sequences
K Lagesen, PF Hallin, E Rødland, HH Stærfeldt, T Rognes, DW Ussery
Nucleic Acids Res 35 (9), 3100-3108, 2007
2002007
The Salmonella enterica Pan-genome
A Jacobsen, RS Hendriksen, FM Aaresturp, DW Ussery, C Friis
Microbial ecology 62 (3), 487, 2011
1872011
Estimating variation within the genes and inferring the phylogeny of 186 sequenced diverse Escherichia coli genomes
RS Kaas, C Friis, DW Ussery, FM Aarestrup
BMC genomics 13 (1), 1-13, 2012
1802012
Genomic taxonomy of vibrios
CC Thompson, ACP Vicente, RC Souza, ATR Vasconcelos, T Vesth, ...
BMC Evolutionary Biology 9 (1), 258, 2009
1622009
The genomic standards consortium
D Field, L Amaral-Zettler, G Cochrane, JR Cole, P Dawyndt, GM Garrity, ...
PLoS Biol 9 (6), e1001088, 2011
1482011
Molecular analysis of the emergence of pandemic Vibrio parahaemolyticus
EF Boyd, ALV Cohen, LM Naughton, DW Ussery, TT Binnewies, OC Stine, ...
BMC microbiology 8 (1), 110, 2008
1402008
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