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Suleiman Ali Khan
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A community effort to assess and improve drug sensitivity prediction algorithms
JC Costello, LM Heiser, E Georgii, M Gönen, MP Menden, NJ Wang, ...
Nature biotechnology 32 (12), 1202-1212, 2014
6132014
Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen
MP Menden, D Wang, MJ Mason, B Szalai, KC Bulusu, Y Guan, T Yu, ...
Nature communications 10 (1), 1-17, 2019
1772019
Prediction of overall survival for patients with metastatic castration-resistant prostate cancer: development of a prognostic model through a crowdsourced challenge with open …
The Lancet Oncology, 2016
128*2016
Prediction of human population responses to toxic compounds by a collaborative competition
F Eduati, LM Mangravite, T Wang, H Tang, JC Bare, R Huang, T Norman, ...
Nature biotechnology 33 (9), 933-940, 2015
1062015
Kernelized Bayesian matrix factorization
M Gonen, SA Khan, S Kaski
Proceedings of The 30th International Conference on Machine Learning 28, 864-872, 2013
1052013
Bayesian group factor analysis
S Virtanen, A Klami, S Khan, S Kaski
Artificial Intelligence and Statistics, 1269-1277, 2012
982012
Crowdsourced assessment of common genetic contribution to predicting anti-TNF treatment response in rheumatoid arthritis
SK Sieberts, F Zhu, J García-García, E Stahl, A Pratap, G Pandey, ...
Nature communications 7 (1), 1-10, 2016
862016
Discovery of novel drug sensitivities in T-PLL by high-throughput ex vivo drug testing and mutation profiling
EI Andersson, S Pützer, B Yadav, O Dufva, S Khan, L He, L Sellner, ...
Leukemia 32 (3), 774-787, 2018
752018
Drug target commons: a community effort to build a consensus knowledge base for drug-target interactions
J Tang, B Ravikumar, Z Alam, A Rebane, M Vähä-Koskela, G Peddinti, ...
Cell chemical biology 25 (2), 224-229. e2, 2018
682018
Drug response prediction by inferring pathway-response associations with kernelized Bayesian matrix factorization
M Ammad-Ud-Din, SA Khan, D Malani, A Murumägi, O Kallioniemi, ...
Bioinformatics 32 (17), i455-i463, 2016
652016
Federated collaborative filtering for privacy-preserving personalized recommendation system
M Ammad-Ud-Din, E Ivannikova, SA Khan, W Oyomno, Q Fu, KE Tan, ...
arXiv preprint arXiv:1901.09888, 2019
632019
Systematic identification of feature combinations for predicting drug response with Bayesian multi-view multi-task linear regression
M Ammad-Ud-Din, SA Khan, K Wennerberg, T Aittokallio
Bioinformatics 33 (14), i359-i368, 2017
592017
Identification of structural features in chemicals associated with cancer drug response: a systematic data-driven analysis
SA Khan, S Virtanen, OP Kallioniemi, K Wennerberg, A Poso, S Kaski
Bioinformatics 30 (17), i497-i504, 2014
492014
Global proteomics profiling improves drug sensitivity prediction: results from a multi-omics, pan-cancer modeling approach
M Ali, SA Khan, K Wennerberg, T Aittokallio
Bioinformatics 34 (8), 1353-1362, 2018
452018
Bayesian multi-view tensor factorization
SA Khan, S Kaski
Joint European Conference on Machine Learning and Knowledge Discovery in …, 2014
392014
Convex factorization machine for toxicogenomics prediction
M Yamada, W Lian, A Goyal, J Chen, K Wimalawarne, SA Khan, S Kaski, ...
Proceedings of the 23rd ACM SIGKDD international conference on knowledge …, 2017
34*2017
Bayesian multi-tensor factorization
SA Khan, E Leppäaho, S Kaski
Machine Learning 105 (2), 233-253, 2016
322016
Comprehensive data-driven analysis of the impact of chemoinformatic structure on the genome-wide biological response profiles of cancer cells to 1159 drugs
SA Khan, A Faisal, JP Mpindi, JA Parkkinen, T Kalliokoski, A Poso, ...
BMC bioinformatics 13 (1), 1-15, 2012
282012
Federated multi-view matrix factorization for personalized recommendations
A Flanagan, W Oyomno, A Grigorievskiy, KE Tan, SA Khan, ...
Joint European Conference on Machine Learning and Knowledge Discovery in …, 2020
272020
Transcriptional response networks for elucidating mechanisms of action of multitargeted agents
M Kibble, SA Khan, N Saarinen, F Iorio, J Saez-Rodriguez, S Mäkelä, ...
Drug discovery today 21 (7), 1063-1075, 2016
202016
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