proovread : large-scale high-accuracy PacBio correction through iterative short read consensus T Hackl, R Hedrich, J Schultz, F Förster Bioinformatics 30 (21), 3004-3011, 2014 | 456 | 2014 |
ITS2 database IV: interactive taxon sampling for internal transcribed spacer 2 based phylogenies C Koetschan, T Hackl, T Müller, M Wolf, F Förster, J Schultz Molecular Phylogenetics and Evolution 63 (3), 585-588, 2012 | 156 | 2012 |
Metagenomic binning of a marine sponge microbiome reveals unity in defense but metabolic specialization BM Slaby, T Hackl, H Horn, K Bayer, U Hentschel The ISME journal 11 (11), 2465-2478, 2017 | 147 | 2017 |
Marine microbial metagenomes sampled across space and time SJ Biller, PM Berube, K Dooley, M Williams, BM Satinsky, T Hackl, ... Scientific data 5 (1), 1-7, 2018 | 133 | 2018 |
Host genome integration and giant virus-induced reactivation of the virophage mavirus MG Fischer, T Hackl Nature 540 (7632), 288-291, 2016 | 119 | 2016 |
Single cell genomes of Prochlorococcus, Synechococcus, and sympatric microbes from diverse marine environments PM Berube, SJ Biller, T Hackl, SL Hogle, BM Satinsky, JW Becker, ... Scientific data 5 (1), 1-11, 2018 | 72 | 2018 |
The ITS2 database B Merget, C Koetschan, T Hackl, F Förster, T Dandekar, T Müller, ... JoVE (Journal of Visualized Experiments), e3806, 2012 | 70 | 2012 |
AliTV—interactive visualization of whole genome comparisons MJ Ankenbrand, S Hohlfeld, T Hackl, F Förster PeerJ Computer Science 3, e116, 2017 | 62 | 2017 |
Genomes of the venus flytrap and close relatives unveil the roots of plant carnivory G Palfalvi, T Hackl, N Terhoeven, TF Shibata, T Nishiyama, ... Current Biology 30 (12), 2312-2320. e5, 2020 | 46 | 2020 |
Novel integrative elements and genomic plasticity in ocean ecosystems T Hackl, R Laurenceau, MJ Ankenbrand, C Bliem, Z Cariani, E Thomas, ... Cell 186 (1), 47-62. e16, 2023 | 24 | 2023 |
Genetic engineering of marine cyanophages reveals integration but not lysogeny in T7-like cyanophages D Shitrit, T Hackl, R Laurenceau, N Raho, MCG Carlson, G Sabehi, ... The ISME Journal 16 (2), 488-499, 2022 | 23 | 2022 |
Virophages and retrotransposons colonize the genomes of a heterotrophic flagellate T Hackl, S Duponchel, K Barenhoff, A Weinmann, MG Fischer Elife 10, e72674, 2021 | 22* | 2021 |
chloroExtractor: extraction and assembly of the chloroplast genome from whole genome shotgun data MJ Ankenbrand, S Pfaff, N Terhoeven, M Qureischi, M Gündel, CL Weiß, ... The Journal of Open Source Software 3 (21), 464, 2018 | 21 | 2018 |
Phosphonate production by marine microbes: Exploring new sources and potential function M Acker, SL Hogle, PM Berube, T Hackl, A Coe, R Stepanauskas, ... Proceedings of the National Academy of Sciences 119 (11), e2113386119, 2022 | 18 | 2022 |
Four high-quality draft genome assemblies of the marine heterotrophic nanoflagellate Cafeteria roenbergensis T Hackl, R Martin, K Barenhoff, S Duponchel, D Heider, MG Fischer Scientific data 7 (1), 29, 2020 | 17 | 2020 |
Improving draft genome contiguity with reference-derived in silico mate-pair libraries JH Grau, T Hackl, KP Koepfli, M Hofreiter GigaScience 7 (5), giy029, 2018 | 15 | 2018 |
Gene expression during bacterivorous growth of a widespread marine heterotrophic flagellate R Massana, A Labarre, D López-Escardó, A Obiol, F Bucchini, T Hackl, ... The ISME Journal 15 (1), 154-167, 2021 | 12 | 2021 |
Siderophores as an iron source for picocyanobacteria in deep chlorophyll maximum layers of the oligotrophic ocean SL Hogle, T Hackl, RM Bundy, J Park, B Satinsky, T Hiltunen, S Biller, ... The ISME Journal 16 (6), 1636-1646, 2022 | 8 | 2022 |
Rapid in vitro prototyping of O-methyltransferases for pathway applications in Escherichia coli K Haslinger, T Hackl, KLJ Prather Cell Chemical Biology 28 (6), 876-886. e4, 2021 | 7 | 2021 |
proovframe: frameshift-correction for long-read (meta) genomics T Hackl, F Trigodet, AM Eren, SJ Biller, JM Eppley, E Luo, A Burger, ... bioRxiv, 2021.08. 23.457338, 2021 | 4 | 2021 |