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Benjamin R. Jack
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Functional sites induce long-range evolutionary constraints in enzymes
BR Jack, AG Meyer, J Echave, CO Wilke
PLoS Biology 14 (5), e1002452, 2016
812016
Predicting the genetic stability of engineered DNA sequences with the EFM calculator
BR Jack, SP Leonard, DM Mishler, BA Renda, D Leon, GA Suárez, ...
ACS synthetic biology 4 (8), 939-943, 2015
532015
Phage-bacterial dynamics with spatial structure: self organization around phage sinks can promote increased cell densities
JJ Bull, KA Christensen, C Scott, BR Jack, CJ Crandall, SM Krone
Antibiotics 7 (1), 8, 2018
292018
Measuring evolutionary rates of proteins in a structural context
DK Sydykova, BR Jack, SJ Spielman, CO Wilke
F1000Research 6, 2017
182017
Reduced protein expression in a virus attenuated by codon deoptimization
BR Jack, DR Boutz, ML Paff, BL Smith, JJ Bull, CO Wilke
G3: Genes, Genomes, Genetics 7 (9), 2957-2968, 2017
152017
Transcript degradation and codon usage regulate gene expression in a lytic phage
BR Jack, DR Boutz, ML Paff, BL Smith, CO Wilke
Virus Evolution 5 (2), vez055, 2019
72019
Intermediate divergence levels maximize the strength of structure–sequence correlations in enzymes and viral proteins
EL Jackson, A Shahmoradi, SJ Spielman, BR Jack, CO Wilke
Protein Science 25 (7), 1341-1353, 2016
72016
Combinatorial approaches to viral attenuation
ML Paff, BR Jack, BL Smith, JJ Bull, CO Wilke
Msystems 3 (4), e00046-18, 2018
42018
Pinetree: a step-wise gene expression simulator with codon-specific translation rates
BR Jack, CO Wilke
Bioinformatics 35 (20), 4176-4178, 2019
32019
Computational modeling of gene expression dynamics in bacteriophage T7
BR Jack
2019
Investigating viral attenuation by promoter knockout: a systems approach
ML Paff, BR Jack, DR Boutz, BL Smith, CO Wilke, JJ Bull
PeerJ PrePrints, 2017
2017
context [version 2; peer review: 4 approved]
DK Sydykova, BR Jack, SJ Spielman, CO Wilke
context [version 2; peer review: 4 approved] 1000, 2018, 1845
1845
SMBE 2017
ML Paff, BR Jack, DR Boutz, BL Smith, CO Wilke, JJ Bull
Disrupted proteome in a virus attenuated by codon deoptimization
BR Jack, DR Boutz, ML Paff, BL Smith, JJ Bull, CO Wilke
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Articles 1–14