Andrew R Gehrke
Andrew R Gehrke
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Diversity and complexity in DNA recognition by transcription factors
G Badis, MF Berger, AA Philippakis, S Talukder, AR Gehrke, SA Jaeger, ...
Science 324 (5935), 1720-1723, 2009
Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences
MF Berger, G Badis, AR Gehrke, S Talukder, AA Philippakis, ...
Cell 133 (7), 1266-1276, 2008
Genome‐wide analysis of ETS‐family DNA‐binding in vitro and in vivo
GH Wei, G Badis, MF Berger, T Kivioja, K Palin, M Enge, M Bonke, ...
The EMBO journal 29 (13), 2147-2160, 2010
The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons
I Braasch, AR Gehrke, JJ Smith, K Kawasaki, T Manousaki, J Pasquier, ...
Nature genetics 48 (4), 427-437, 2016
LUX ARRHYTHMO encodes a nighttime repressor of circadian gene expression in the Arabidopsis core clock
A Helfer, DA Nusinow, BY Chow, AR Gehrke, ML Bulyk, SA Kay
Current Biology 21 (2), 126-133, 2011
Specific DNA-binding by apicomplexan AP2 transcription factors
EK De Silva, AR Gehrke, K Olszewski, I León, JS Chahal, ML Bulyk, ...
Proceedings of the National Academy of Sciences 105 (24), 8393-8398, 2008
Digits and fin rays share common developmental histories
T Nakamura, AR Gehrke, J Lemberg, J Szymaszek, NH Shubin
Nature 537 (7619), 225-228, 2016
Deep conservation of wrist and digit enhancers in fish
AR Gehrke, I Schneider, E De La Calle-Mustienes, JJ Tena, ...
Proceedings of the National Academy of Sciences 112 (3), 803-808, 2015
Acoel genome reveals the regulatory landscape of whole-body regeneration
AR Gehrke, E Neverett, YJ Luo, A Brandt, L Ricci, RE Hulett, A Gompers, ...
Science 363 (6432), eaau6173, 2019
Neoblasts and the evolution of whole-body regeneration
AR Gehrke, M Srivastava
Current opinion in genetics & development 40, 131-137, 2016
Appendage expression driven by the Hoxd Global Control Region is an ancient gnathostome feature
I Schneider, I Aneas, AR Gehrke, RD Dahn, MA Nobrega, NH Shubin
Proceedings of the National Academy of Sciences 108 (31), 12782-12786, 2011
Transcriptional regulation and stabilization of left–right neuronal identity in C. elegans
BJ Lesch, AR Gehrke, ML Bulyk, CI Bargmann
Genes & development 23 (3), 345-358, 2009
Predicting the binding preference of transcription factors to individual DNA k-mers
TM Alleyne, L Peña-Castillo, G Badis, S Talukder, MF Berger, AR Gehrke, ...
Bioinformatics 25 (8), 1012-1018, 2009
Cis-regulatory programs in the development and evolution of vertebrate paired appendages
AR Gehrke, NH Shubin
Seminars in cell & developmental biology 57, 31-39, 2016
Molecular mechanisms underlying the exceptional adaptations of batoid fins
T Nakamura, J Klomp, J Pieretti, I Schneider, AR Gehrke, NH Shubin
Proceedings of the National Academy of Sciences 112 (52), 15940-15945, 2015
Organogenesis in deep time: A problem in genomics, development, and paleontology
J Pieretti, AR Gehrke, I Schneider, N Adachi, T Nakamura, NH Shubin
Proceedings of the National Academy of Sciences 112 (16), 4871-4876, 2015
Objective sequence-based subfamily classifications of mouse homeodomains reflect their in vitro DNA-binding preferences
MA Santos, AL Turinsky, S Ong, J Tsai, MF Berger, G Badis, S Talukder, ...
Nucleic acids research 38 (22), 7927-7942, 2010
Correction to: Assessing Chromatin Accessibility during WBR in Acoels
AR Gehrke, M Srivastava
Whole-Body Regeneration: Methods and Protocols, C1-C1, 2022
Assessing Chromatin Accessibility During WBR in Acoels
AR Gehrke, M Srivastava
Whole-Body Regeneration: Methods and Protocols, 549-561, 2022
The evolutionary history of Hox gene expression in vertebrate appendages
AR Gehrke
The University of Chicago, 2016
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