| Mash: fast genome and metagenome distance estimation using MinHash BD Ondov, TJ Treangen, P Melsted, AB Mallonee, NH Bergman, S Koren, ... Genome Biology, 2016 | 1734 | 2016 |
| Interactive metagenomic visualization in a Web browser BD Ondov, NH Bergman, AM Phillippy BMC bioinformatics 12 (1), 1-10, 2011 | 1540 | 2011 |
| The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes TJ Treangen, BD Ondov, S Koren, AM Phillippy Genome biology 15, 1-15, 2014 | 1186 | 2014 |
| Structure and complexity of a bacterial transcriptome KD Passalacqua, A Varadarajan, BD Ondov, DT Okou, ME Zwick, ... Journal of bacteriology 191 (10), 3203-3211, 2009 | 271 | 2009 |
| MetAMOS: a modular and open source metagenomic assembly and analysis pipeline TJ Treangen, S Koren, DD Sommer, B Liu, I Astrovskaya, B Ondov, ... Genome biology 14, 1-20, 2013 | 209 | 2013 |
| Efficient mapping of Applied Biosystems SOLiD sequence data to a reference genome for functional genomic applications BD Ondov, A Varadarajan, KD Passalacqua, NH Bergman Bioinformatics 24 (23), 2776-2777, 2008 | 148 | 2008 |
| Mash Screen: high-throughput sequence containment estimation for genome discovery BD Ondov, GJ Starrett, A Sappington, A Kostic, S Koren, CB Buck, ... Genome biology 20, 1-13, 2019 | 137 | 2019 |
| Complete Genome Sequence of the Quality Control Strain Staphylococcus aureus subsp. aureus ATCC 25923 TJ Treangen, RA Maybank, S Enke, MB Friss, LF Diviak, DKR Karaolis, ... Genome announcements 2 (6), e01110-14, 2014 | 66 | 2014 |
| Face to face: Evaluating visual comparison B Ondov, N Jardine, N Elmqvist, S Franconeri IEEE transactions on visualization and computer graphics 25 (1), 861-871, 2018 | 46 | 2018 |
| Strand-Specific RNA-Seq Reveals Ordered Patterns of Sense and Antisense Transcription in Bacillus anthracis KD Passalacqua, A Varadarajan, C Weist, BD Ondov, B Byrd, TD Read, ... Public Library of Science 7 (8), e43350, 2012 | 40 | 2012 |
| The perceptual proxies of visual comparison N Jardine, BD Ondov, N Elmqvist, S Franconeri IEEE transactions on visualization and computer graphics 26 (1), 1012-1021, 2019 | 27 | 2019 |
| Psoralen inactivation of viruses: a process for the safe manipulation of viral antigen and nucleic acid K Schneider, L Wronka-Edwards, M Leggett-Embrey, E Walker, P Sun, ... Viruses 7 (11), 5875-5888, 2015 | 26 | 2015 |
| An alignment algorithm for bisulfite sequencing using the Applied Biosystems SOLiD System BD Ondov, C Cochran, M Landers, GD Meredith, M Dudas, NH Bergman Bioinformatics 26 (15), 1901-1902, 2010 | 25 | 2010 |
| BLAST-based validation of metagenomic sequence assignments AL Bazinet, BD Ondov, DD Sommer, S Ratnayake PeerJ 6, e4892, 2018 | 14 | 2018 |
| Revealing perceptual proxies with adversarial examples BD Ondov, F Yang, M Kay, N Elmqvist, S Franconeri IEEE transactions on visualization and computer graphics 27 (2), 1073-1083, 2020 | 10 | 2020 |
| Genome sequence of the attenuated Carbosap vaccine strain of Bacillus anthracis R Harrington, BD Ondov, D Radune, MB Friss, J Klubnik, L Diviak, ... Genome announcements 1 (1), e00067-12, 2013 | 7 | 2013 |
| Current progress and future opportunities in applications of bioinformatics for biodefense and pathogen detection: report from the Winter Mid-Atlantic Microbiome Meet-up … JS Meisel, DJ Nasko, B Brubach, V Cepeda-Espinoza, J Chopyk, ... Microbiome 6, 1-10, 2018 | 6 | 2018 |
| A survey of automated methods for biomedical text simplification B Ondov, K Attal, D Demner-Fushman Journal of the American Medical Informatics Association 29 (11), 1976-1988, 2022 | 2 | 2022 |
| A dataset for plain language adaptation of biomedical abstracts K Attal, B Ondov, D Demner-Fushman Scientific Data 10 (1), 8, 2023 | | 2023 |
| CoronaViz: Visualizing Multilayer Spatiotemporal COVID-19 Data with Animated Geocircles B Ondov, HB Patel, AT Kuo, H Samet, J Kastner, Y Han, H Wei, N Elmqvist arXiv preprint arXiv:2211.05823, 2022 | | 2022 |
Adam M. PhillippySr. Investigator, National Human Genome Research Institute, NIHVerified email at nih.gov
