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Nuno Bandeira
Nuno Bandeira
Bestätigte E-Mail-Adresse bei eng.ucsd.edu
Titel
Zitiert von
Zitiert von
Jahr
Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking
M Wang, JJ Carver, VV Phelan, LM Sanchez, N Garg, Y Peng, ...
Nature biotechnology 34 (8), 828-837, 2016
31802016
ProteomeXchange provides globally coordinated proteomics data submission and dissemination
JA Vizcaíno, EW Deutsch, R Wang, A Csordas, F Reisinger, D Ríos, ...
Nature biotechnology 32 (3), 223-226, 2014
26572014
Mass spectral molecular networking of living microbial colonies
J Watrous, P Roach, T Alexandrov, BS Heath, JY Yang, RD Kersten, ...
Proceedings of the National Academy of Sciences 109 (26), E1743-E1752, 2012
9612012
The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition
EW Deutsch, A Csordas, Z Sun, A Jarnuczak, Y Perez-Riverol, T Ternent, ...
Nucleic acids research, gkw936, 2016
8502016
Feature-based molecular networking in the GNPS analysis environment
LF Nothias, D Petras, R Schmid, K Dührkop, J Rainer, A Sarvepalli, ...
Nature methods 17 (9), 905-908, 2020
7832020
The ProteomeXchange consortium in 2020: enabling ‘big data’approaches in proteomics
EW Deutsch, N Bandeira, V Sharma, Y Perez-Riverol, JJ Carver, ...
Nucleic acids research 48 (D1), D1145-D1152, 2020
6422020
Reproducible molecular networking of untargeted mass spectrometry data using GNPS
AT Aron, EC Gentry, KL McPhail, LF Nothias, M Nothias-Esposito, ...
Nature protocols 15 (6), 1954-1991, 2020
3982020
Molecular cartography of the human skin surface in 3D
A Bouslimani, C Porto, CM Rath, M Wang, Y Guo, A Gonzalez, ...
Proceedings of the National Academy of Sciences 112 (17), E2120-E2129, 2015
3862015
MS/MS networking guided analysis of molecule and gene cluster families
DD Nguyen, CH Wu, WJ Moree, A Lamsa, MH Medema, X Zhao, ...
Proceedings of the National Academy of Sciences 110 (28), E2611-E2620, 2013
2822013
The generating function of CID, ETD, and CID/ETD pairs of tandem mass spectra: applications to database search
S Kim, N Mischerikow, N Bandeira, JD Navarro, L Wich, S Mohammed, ...
Molecular & Cellular Proteomics 9 (12), 2840-2852, 2010
2822010
Clustering millions of tandem mass spectra
AM Frank, N Bandeira, Z Shen, S Tanner, SP Briggs, RD Smith, ...
Journal of proteome research 7 (01), 113-122, 2008
2782008
Interkingdom metabolic transformations captured by microbial imaging mass spectrometry
WJ Moree, VV Phelan, CH Wu, N Bandeira, DS Cornett, BM Duggan, ...
Proceedings of the National Academy of Sciences 109 (34), 13811-13816, 2012
2742012
Molecular networking and pattern-based genome mining improves discovery of biosynthetic gene clusters and their products from Salinispora species
KR Duncan, M Crüsemann, A Lechner, A Sarkar, J Li, N Ziemert, M Wang, ...
Chemistry & biology 22 (4), 460-471, 2015
2012015
Protein identification by spectral networks analysis
N Bandeira, D Tsur, A Frank, PA Pevzner
Proceedings of the National Academy of Sciences 104 (15), 6140-6145, 2007
1962007
A high-stringency blueprint of the human proteome
S Adhikari, EC Nice, EW Deutsch, L Lane, GS Omenn, SR Pennington, ...
Nature communications 11 (1), 5301, 2020
1802020
Mass spectrometry searches using MASST
M Wang, AK Jarmusch, F Vargas, AA Aksenov, JM Gauglitz, K Weldon, ...
Nature biotechnology 38 (1), 23-26, 2020
1782020
Fast multi-blind modification search through tandem mass spectrometry
S Na, N Bandeira, E Paek
Molecular & Cellular Proteomics 11 (4), 2012
1782012
Target-decoy approach and false discovery rate: when things may go wrong
N Gupta, N Bandeira, U Keich, PA Pevzner
Journal of the American Society for Mass Spectrometry 22, 1111-1120, 2011
1762011
Significance estimation for large scale metabolomics annotations by spectral matching
K Scheubert, F Hufsky, D Petras, M Wang, LF Nothias, K Dührkop, ...
Nature Communications 8 (1), 1494, 2017
1742017
False discovery rates in spectral identification
K Jeong, S Kim, N Bandeira
BMC bioinformatics 13, 1-15, 2012
1742012
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