| The repertoire of mutational signatures in human cancer LB Alexandrov, J Kim, NJ Haradhvala, MN Huang, AW Tian Ng, Y Wu, ... Nature 578 (7793), 94-101, 2020 | 2377 | 2020 |
| ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia SG Landt, GK Marinov, A Kundaje, P Kheradpour, F Pauli, S Batzoglou, ... Genome research 22 (9), 1813-1831, 2012 | 2195 | 2012 |
| Pan-cancer analysis of whole genomes Nature 578 (7793), 82-93, 2020 | 1499 | 2020 |
| The evolutionary history of 2,658 cancers M Gerstung, C Jolly, I Leshchiner, SC Dentro, S Gonzalez, D Rosebrock, ... Nature 578 (7793), 122-128, 2020 | 846 | 2020 |
| XBP1 promotes triple-negative breast cancer by controlling the HIF1α pathway X Chen, D Iliopoulos, Q Zhang, Q Tang, MB Greenblatt, M Hatziapostolou, ... Nature 508 (7494), 103-107, 2014 | 829 | 2014 |
| REST and stress resistance in ageing and Alzheimer’s disease T Lu, L Aron, J Zullo, Y Pan, H Kim, Y Chen, TH Yang, HM Kim, D Drake, ... Nature 507 (7493), 448-454, 2014 | 775 | 2014 |
| Cistrome: an integrative platform for transcriptional regulation studies T Liu, JA Ortiz, L Taing, CA Meyer, B Lee, Y Zhang, H Shin, SS Wong, ... Genome biology 12, 1-10, 2011 | 731 | 2011 |
| Patterns of somatic structural variation in human cancer genomes Y Li, ND Roberts, JA Wala, O Shapira, SE Schumacher, K Kumar, ... Nature 578 (7793), 112-121, 2020 | 689 | 2020 |
| Integrative genomic analyses reveal clinically relevant long noncoding RNAs in human cancer Z Du, T Fei, RGW Verhaak, Z Su, Y Zhang, M Brown, Y Chen, XS Liu Nature structural & molecular biology 20 (7), 908-913, 2013 | 567 | 2013 |
| Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing I Cortés-Ciriano, JJK Lee, R Xi, D Jain, YL Jung, L Yang, D Gordenin, ... Nature genetics 52 (3), 331-341, 2020 | 537 | 2020 |
| Analyses of non-coding somatic drivers in 2,658 cancer whole genomes E Rheinbay, MM Nielsen, F Abascal, JA Wala, O Shapira, G Tiao, ... Nature 578 (7793), 102-111, 2020 | 499 | 2020 |
| Targeting androgen receptor in estrogen receptor-negative breast cancer M Ni, Y Chen, E Lim, H Wimberly, ST Bailey, Y Imai, DL Rimm, XS Liu, ... Cancer cell 20 (1), 119-131, 2011 | 434 | 2011 |
| Enhancer RNAs participate in androgen receptor-driven looping that selectively enhances gene activation CL Hsieh, T Fei, Y Chen, T Li, Y Gao, X Wang, T Sun, CJ Sweeney, ... Proceedings of the National Academy of Sciences 111 (20), 7319-7324, 2014 | 396 | 2014 |
| The landscape of viral associations in human cancers M Zapatka, I Borozan, DS Brewer, M Iskar, A Grundhoff, M Alawi, N Desai, ... Nature genetics 52 (3), 320-330, 2020 | 324 | 2020 |
| Pan-cancer analysis of whole genomes identifies driver rearrangements promoted by LINE-1 retrotransposition B Rodriguez-Martin, EG Alvarez, A Baez-Ortega, J Zamora, F Supek, ... Nature genetics 52 (3), 306-319, 2020 | 315 | 2020 |
| Integrative analyses reveal a long noncoding RNA-mediated sponge regulatory network in prostate cancer Z Du, T Sun, E Hacisuleyman, T Fei, X Wang, M Brown, JL Rinn, MGS Lee, ... Nature communications 7 (1), 10982, 2016 | 295 | 2016 |
| Genome-wide CRISPR screen identifies HNRNPL as a prostate cancer dependency regulating RNA splicing T Fei, Y Chen, T Xiao, W Li, L Cato, P Zhang, MB Cotter, M Bowden, ... Proceedings of the National Academy of Sciences 114 (26), E5207-E5215, 2017 | 291 | 2017 |
| Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes SC Dentro, I Leshchiner, K Haase, M Tarabichi, J Wintersinger, ... Cell 184 (8), 2239-2254. e39, 2021 | 284 | 2021 |
| Genomic basis for RNA alterations in cancer PCAWG Transcriptome Core Group Calabrese Claudia 2 Davidson Natalie R. 3 4 5 ... Nature 578 (7793), 129-136, 2020 | 273 | 2020 |
| Systematic evaluation of factors influencing ChIP-seq fidelity Y Chen, N Negre, Q Li, JO Mieczkowska, M Slattery, T Liu, Y Zhang, ... Nature methods 9 (6), 609-614, 2012 | 212 | 2012 |
