| Pan-cancer analysis of whole genomes Nature 578 (7793), 82-93, 2020 | 1663* | 2020 |
| An evaluation of copy number variation detection tools for cancer using whole exome sequencing data F Zare, M Dow, N Monteleone, A Hosny, S Nabavi BMC bioinformatics 18, 1-13, 2017 | 171 | 2017 |
| Genome privacy: challenges, technical approaches to mitigate risk, and ethical considerations in the United States S Wang, X Jiang, S Singh, R Marmor, L Bonomi, D Fox, M Dow, ... Annals of the New York Academy of Sciences 1387 (1), 73-83, 2017 | 110 | 2017 |
| The emerging potential for network analysis to inform precision cancer medicine K Ozturk, M Dow, DE Carlin, R Bejar, H Carter Journal of molecular biology 430 (18), 2875-2899, 2018 | 93 | 2018 |
| Integrative genomic analysis of mouse and human hepatocellular carcinoma M Dow, RM Pyke, BY Tsui, LB Alexandrov, H Nakagawa, K Taniguchi, ... Proceedings of the National Academy of Sciences 115 (42), E9879-E9888, 2018 | 84 | 2018 |
| Activation of NF-κB and p300/CBP potentiates cancer chemoimmunotherapy through induction of MHC-I antigen presentation Y Zhou, IN Bastian, MD Long, M Dow, W Li, T Liu, RK Ngu, L Antonucci, ... Proceedings of the National Academy of Sciences 118 (8), e2025840118, 2021 | 55 | 2021 |
| PREMIX: Privacy-preserving EstiMation of individual admixture F Chen, M Dow, S Ding, Y Lu, X Jiang, H Tang, S Wang AMIA Annual Symposium Proceedings 2016, 1747, 2016 | 37 | 2016 |
| Immune DNA signature of T-cell infiltration in breast tumor exomes E Levy, R Marty, V Gárate Calderón, B Woo, M Dow, R Armisen, H Carter, ... Scientific reports 6 (1), 30064, 2016 | 31 | 2016 |
| Large-scale uniform analysis of cancer whole genomes in multiple computing environments CK Yung, BD O’Connor, S Yakneen, J Zhang, K Ellrott, K Kleinheinz, ... BioRxiv, 161638, 2017 | 22 | 2017 |
| Increasing metadata coverage of SRA BioSample entries using deep learning–based named entity recognition A Klie, BY Tsui, S Mollah, D Skola, M Dow, CN Hsu, H Carter Database 2021, baab021, 2021 | 16 | 2021 |
| Butler enables rapid cloud-based analysis of thousands of human genomes S Yakneen, SM Waszak, M Gertz, JO Korbel Nature biotechnology 38 (3), 288-292, 2020 | 16 | 2020 |
| The RUNX1-ETO target gene RASSF2 suppresses t (8; 21) AML development and regulates Rac GTPase signaling SA Stoner, KTH Liu, ET Andrews, M Liu, KI Arimoto, M Yan, AG Davis, ... Blood cancer journal 10 (2), 16, 2020 | 15 | 2020 |
| Extracting allelic read counts from 250,000 human sequencing runs in Sequence Read Archive B Tsui, M Dow, D Skola, H Carter BIOCOMPUTING 2019: Proceedings of the Pacific Symposium, 196-207, 2018 | 12 | 2018 |
| Food-intake normalization of dysregulated fatty acids in women with anorexia nervosa N Nguyen, M Dow, B Woodside, JB German, O Quehenberger, PB Shih Nutrients 11 (9), 2208, 2019 | 10 | 2019 |
| Author Correction: Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing I Cortés-Ciriano, JJK Lee, R Xi, D Jain, YL Jung, L Yang, D Gordenin, ... Nature genetics 55 (6), 1076-1076, 2023 | 1 | 2023 |
| Author Correction: Pan-cancer analysis of whole genomes Nature 614 (7948), E39-E39, 2023 | 1 | 2023 |
| Creating a scalable deep learning based Named Entity Recognition Model for biomedical textual data by repurposing BioSample free-text annotations BY Tsui, S Mollah, D Skola, M Dow, CN Hsu, H Carter Preprint at https://www. biorxiv. org/content/biorxiv/early/2018/09/12 …, 2018 | 1 | 2018 |
| Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples WU Meyerson, LJ Dursi, LB Wang, G Dong, WW Liang, A Weerasinghe, ... Nature Publishing Group UK, 2020 | | 2020 |
| Sex differences in oncogenic mutational processes SD Prokopec, RX Sun, F Yousif, N Schmitz, F Al-Shahrour, G Atwal, ... Nature Publishing Group UK, 2020 | | 2020 |
| In vitro evolution and whole genome analysis to study chemotherapy drug resistance in haploid human cells JC Jado, M Dow, K Carolino, A Klie, GJ Fonseca, T Ideker, H Carter, ... bioRxiv, 2020.03. 17.982181, 2020 | | 2020 |
