| EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats J Ison, M Kalaš, I Jonassen, D Bolser, M Uludag, H McWilliam, J Malone, ... Bioinformatics 29 (10), 1325-1332, 2013 | 157 | 2013 |
| FreeContact: fast and free software for protein contact prediction from residue co-evolution L Kaján, TA Hopf, M Kalaš, DS Marks, B Rost BMC bioinformatics 15 (1), 85, 2014 | 130 | 2014 |
| Tools and data services registry: a community effort to document bioinformatics resources J Ison, K Rapacki, H Ménager, M Kalaš, E Rydza, P Chmura, C Anthon, ... Nucleic acids research 44 (D1), D38-D47, 2016 | 112 | 2016 |
| BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains T Katayama, MD Wilkinson, KF Aoki-Kinoshita, S Kawashima, ... Journal of biomedical semantics 5, 5, 2014 | 54 | 2014 |
| The EMBRACE web service collection S Pettifer, J Ison, M Kalaš, D Thorne, P McDermott, I Jonassen, A Liaquat, ... Nucleic acids research 38 (suppl_2), W683-W688, 2010 | 43 | 2010 |
| The Genomic HyperBrowser: an analysis web server for genome-scale data GK Sandve, S Gundersen, M Johansen, IK Glad, K Gunathasan, L Holden, ... Nucleic acids research 41 (W1), W133-W141, 2013 | 39 | 2013 |
| Community-driven development for computational biology at Sprints, Hackathons and Codefests S Möller, E Afgan, M Banck, RJP Bonnal, T Booth, J Chilton, PJA Cock, ... BMC bioinformatics 15 (14), 1-7, 2014 | 37 | 2014 |
| Identifying elemental genomic track types and representing them uniformly S Gundersen, M Kalaš, O Abul, A Frigessi, E Hovig, GK Sandve BMC bioinformatics 12 (1), 494, 2011 | 36 | 2011 |
| BioXSD: the common data-exchange format for everyday bioinformatics web services M Kalaš, P Puntervoll, A Joseph, E Bartaševičiūtė, A Töpfer, ... Bioinformatics 26 (18), i540-i546, 2010 | 32 | 2010 |
| Workshop on laboratory protocol standards for the molecular methods database T Klingström, L Soldatova, R Stevens, TE Roos, MA Swertz, KM Müller, ... New biotechnology 30 (2), 109-113, 2013 | 16 | 2013 |
| Using registries to integrate bioinformatics tools and services into workbench environments H Ménager, M Kalaš, K Rapacki, J Ison International Journal on Software Tools for Technology Transfer 18 (6), 581-586, 2016 | 13 | 2016 |
| Robust cross-platform workflows: how technical and scientific communities collaborate to develop, test and share best practices for data analysis S Möller, SW Prescott, L Wirzenius, P Reinholdtsen, B Chapman, P Prins, ... Data Science and Engineering 2 (3), 232-244, 2017 | 11 | 2017 |
| ReGaTE: registration of galaxy tools in elixir O Doppelt-Azeroual, F Mareuil, E Deveaud, M Kalaš, N Soranzo, ... GigaScience 6 (6), gix022, 2017 | 7 | 2017 |
| Sprints, Hackathons and Codefests as community gluons in computational biology S Möller, E Afgan, M Banck, PJA Cock, M Kalas, L Kajan, P Prins, J Quinn, ... EMBnet. journal 19 (B), 40-42, 2013 | 7 | 2013 |
| Community curation of bioinformatics software and data resources J Ison, H Ménager, B Brancotte, E Jaaniso, A Salumets, T Raček, ... Briefings in bioinformatics 21 (5), 1697-1705, 2020 | 6 | 2020 |
| The bio. tools registry of software tools and data resources for the life sciences J Ison, H Ienasescu, P Chmura, E Rydza, H Menager, M Kalaš, ... Genome biology 20 (1), 1-4, 2019 | 6 | 2019 |
| Norwegian e-infrastructure for life sciences (NeLS) KM Tekle, S Gundersen, K Klepper, LA Bongo, IA Raknes, X Li, W Zhang, ... F1000Research 7, 2018 | 4 | 2018 |
| Efforts towards accessible and reliable bioinformatics M Kalaš The University of Bergen, 2015 | 2 | 2015 |
| EDAM-bioimaging: The ontology of bioimage informatics operations, topics, data, and formats (update 2020) M Kalaš, L Plantard, N Sladoje, J Lindblad, M Kirschmann, M Jones, ... ELIXIR All Hands 2020, 2020 | | 2020 |
| EDAM-bioimaging: the ontology of bioimage informatics operations, topics, data, and formats (2019 update) M Kalaš, L Plantard, N Sladoje, J Lindblad, MA Kirschmann, M Jones, ... F1000Research 8, 2019 | | 2019 |
