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Janaka N Edirisinghe
Janaka N Edirisinghe
Assistant Scientist, Argonne National Labs / University of Chicago, IL, USA
Verified email at anl.gov - Homepage
Title
Cited by
Cited by
Year
KBase: the United States department of energy systems biology knowledgebase
AP Arkin, RW Cottingham, CS Henry, NL Harris, RL Stevens, S Maslov, ...
Nature biotechnology 36 (7), 566-569, 2018
6142018
Vitamin K2 is a mitochondrial electron carrier that rescues pink1 deficiency
M Vos, G Esposito, JN Edirisinghe, S Vilain, DM Haddad, JR Slabbaert, ...
Science 336 (6086), 1306-1310, 2012
3482012
A genomic catalog of Earth’s microbiomes
S Nayfach, S Roux, R Seshadri, D Udwary, N Varghese, F Schulz, D Wu, ...
Nature biotechnology 39 (4), 499-509, 2021
2602021
Genome sequences of the biotechnologically important Bacillus megaterium strains QM B1551 and DSM319
M Eppinger, B Bunk, MA Johns, JN Edirisinghe, KK Kutumbaka, ...
Journal of bacteriology 193 (16), 4199-4213, 2011
1962011
MEMOTE for standardized genome-scale metabolic model testing
C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ...
Nature biotechnology 38 (3), 272-276, 2020
1872020
Metabolic reconstruction and modeling microbial electrosynthesis
CW Marshall, DE Ross, KM Handley, PB Weisenhorn, JN Edirisinghe, ...
Scientific reports 7 (1), 1-12, 2017
972017
Comparative genomics of cultured and uncultured strains suggests genes essential for free-living growth of Liberibacter
JR Fagen, MT Leonard, CM McCullough, JN Edirisinghe, CS Henry, ...
PLoS One 9 (1), e84469, 2014
652014
A rogue earthquake off Sumatra
JJ McGuire, GC Beroza
Science 336 (6085), 1118-1119, 2012
632012
The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes
SMD Seaver, F Liu, Q Zhang, J Jeffryes, JP Faria, JN Edirisinghe, ...
Nucleic acids research 49 (D1), D575-D588, 2021
622021
The DOE systems biology knowledgebase (KBase)
AP Arkin, RL Stevens, RW Cottingham, S Maslov, CS Henry, P Dehal, ...
BioRxiv, 096354, 2016
622016
Memote: A community driven effort towards a standardized genome-scale metabolic model test suite
C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ...
BioRxiv, 350991, 2018
532018
From DNA to FBA: how to build your own genome-scale metabolic model
TGOCRAE Daniel A. Cuevas, Janaka Edirisinghe, Chris S. Henry, Ross Overbeek
Frontiers of Microbiology, 2016
452016
Vitamin K2 takes charge
S Bhalerao, TR Clandinin
Science 336 (6086), 1241-1242, 2012
342012
Modeling central metabolism and energy biosynthesis across microbial life
JN Edirisinghe, P Weisenhorn, N Conrad, F Xia, R Overbeek, RL Stevens, ...
Bmc Genomics 17 (1), 1-11, 2016
332016
Evolution of substrate specificity in a retained enzyme driven by gene loss
AL Juárez-Vázquez, JN Edirisinghe, EA Verduzco-Castro, K Michalska, ...
Elife 6, e22679, 2017
242017
AGORA2: large scale reconstruction of the microbiome highlights wide-spread drug-metabolising capacities
A Heinken, G Acharya, DA Ravcheev, J Hertel, M Nyga, OE Okpala, ...
BioRxiv, 2020
182020
The DOE systems biology knowledgebase (KBase). bioRxiv 096354
AP Arkin, RL Stevens, RW Cottingham, S Maslov, CS Henry, P Dehal, ...
92016
Constructing and analyzing metabolic flux models of microbial communities
JP Faria, T Khazaei, JN Edirisinghe, P Weisenhorn, S Seaver, N Conrad, ...
Hydrocarbon and Lipid Microbiology Protocols, 247-273, 2016
92016
Computing and applying atomic regulons to understand gene expression and regulation
JP Faria, JJ Davis, JN Edirisinghe, RC Taylor, P Weisenhorn, RD Olson, ...
Frontiers in microbiology 7, 1819, 2016
82016
The ModelSEED Database for the integration of metabolic annotations and the reconstruction, comparison, and analysis of metabolic models for plants, fungi, and microbes
SMD Seaver, F Liu, Q Zhang, J Jeffryes, JP Faria, JN Edirisinghe, ...
bioRxiv, 2020
52020
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