Robert Kueffner
Robert Kueffner
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Zitiert von
Zitiert von
Wisdom of crowds for robust gene network inference
D Marbach, JC Costello, R Küffner, NM Vega, RJ Prill, DM Camacho, ...
Nature methods 9 (8), 796-804, 2012
RelEx—Relation extraction using dependency parse trees
K Fundel, R Küffner, R Zimmer
Bioinformatics 23 (3), 365-371, 2007
Pathway analysis in metabolic databases via differential metabolic display (DMD)
R Küffner, R Zimmer, T Lengauer
Bioinformatics 16 (9), 825-836, 2000
Crowdsourced analysis of clinical trial data to predict amyotrophic lateral sclerosis progression
R Küffner, N Zach, R Norel, J Hawe, D Schoenfeld, L Wang, G Li, L Fang, ...
Nature biotechnology 33 (1), 51-57, 2015
Executable Petri net models for the analysis of metabolic pathways
H Genrich, R Küffner, K Voss
International Journal on Software Tools for Technology Transfer 3 (4), 394-404, 2001
Analysis of gene expression data with pathway scores.
A Zien, R Küffner, R Zimmer, T Lengauer
Ismb 8, 407-417, 2000
Inferring gene regulatory networks by ANOVA
R Küffner, T Petri, P Tavakkolkhah, L Windhager, R Zimmer
Bioinformatics 28 (10), 1376-1382, 2012
Involvement of two novel chaperones in the assembly of mitochondrial NADH: Ubiquinone oxidoreductase (complex I)
R Küffner, A Rohr, A Schmiede, C Krüll, U Schulte
Journal of molecular biology 283 (2), 409-417, 1998
Reliable gene signatures for microarray classification: assessment of stability and performance
CA Davis, F Gerick, V Hintermair, CC Friedel, K Fundel, R Küffner, ...
Bioinformatics 22 (19), 2356-2363, 2006
miRSel: automated extraction of associations between microRNAs and genes from the biomedical literature
H Naeem, R Küffner, G Csaba, R Zimmer
BMC bioinformatics 11 (1), 1-8, 2010
From sets to graphs: towards a realistic enrichment analysis of transcriptomic systems
L Geistlinger, G Csaba, R Küffner, N Mulder, R Zimmer
Bioinformatics 27 (13), i366-i373, 2011
M. Kellis, JJ Collins, and G. Stolovitzky. Wisdom of crowds for robust gene network inference
D Marbach, JC Costello, R Küffner, NM Vega, RJ Prill, DM Camacho, ...
Nature methods 9 (8), 796-804, 2012
Microarray analyses of transdifferentiated mesenchymal stem cells
T Schilling, R Küffner, L Klein‐Hitpass, R Zimmer, F Jakob, N Schütze
Journal of cellular biochemistry 103 (2), 413-433, 2008
On protocols and measures for the validation of supervised methods for the inference of biological networks
M Schrynemackers, R Küffner, P Geurts
Frontiers in genetics 4, 262, 2013
Petri nets with fuzzy logic (PNFL): reverse engineering and parametrization
R Küffner, T Petri, L Windhager, R Zimmer
PLoS One 5 (9), e12807, 2010
Expert knowledge without the expert: integrated analysis of gene expression and literature to derive active functional contexts
R Küffner, K Fundel, R Zimmer
Bioinformatics 21 (suppl_2), ii259-ii267, 2005
Being PRO-ACTive: what can a clinical trial database reveal about ALS?
N Zach, DL Ennist, AA Taylor, H Alon, A Sherman, R Kueffner, J Walker, ...
Neurotherapeutics 12 (2), 417-423, 2015
Rigorous assessment of gene set enrichment tests
H Naeem, R Zimmer, P Tavakkolkhah, R Küffner
Bioinformatics 28 (11), 1480-1486, 2012
ProSAS: a database for analyzing alternative splicing in the context of protein structures
F Birzele, R Küffner, F Meier, F Oefinger, C Potthast, R Zimmer
Nucleic acids research 36 (suppl_1), D63-D68, 2007
MIRTFnet: analysis of miRNA regulated transcription factors
H Naeem, R Küffner, R Zimmer
PloS one 6 (8), e22519, 2011
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