| Wisdom of crowds for robust gene network inference D Marbach, JC Costello, R Küffner, NM Vega, RJ Prill, DM Camacho, ... Nature methods 9 (8), 796-804, 2012 | 1313 | 2012 |
| RelEx—Relation extraction using dependency parse trees K Fundel, R Küffner, R Zimmer Bioinformatics 23 (3), 365-371, 2007 | 660 | 2007 |
| Pathway analysis in metabolic databases via differential metabolic display (DMD) R Küffner, R Zimmer, T Lengauer Bioinformatics 16 (9), 825-836, 2000 | 186 | 2000 |
| Executable Petri net models for the analysis of metabolic pathways H Genrich, R Küffner, K Voss International Journal on Software Tools for Technology Transfer 3 (4), 394-404, 2001 | 156 | 2001 |
| Crowdsourced analysis of clinical trial data to predict amyotrophic lateral sclerosis progression R Küffner, N Zach, R Norel, J Hawe, D Schoenfeld, L Wang, G Li, L Fang, ... Nature biotechnology 33 (1), 51-57, 2015 | 149 | 2015 |
| Analysis of gene expression data with pathway scores. A Zien, R Küffner, R Zimmer, T Lengauer Ismb 8, 407-417, 2000 | 146 | 2000 |
| Involvement of two novel chaperones in the assembly of mitochondrial NADH: Ubiquinone oxidoreductase (complex I) R Küffner, A Rohr, A Schmiede, C Krüll, U Schulte Journal of molecular biology 283 (2), 409-417, 1998 | 116 | 1998 |
| Inferring gene regulatory networks by ANOVA R Küffner, T Petri, P Tavakkolkhah, L Windhager, R Zimmer Bioinformatics 28 (10), 1376-1382, 2012 | 113 | 2012 |
| Reliable gene signatures for microarray classification: assessment of stability and performance CA Davis, F Gerick, V Hintermair, CC Friedel, K Fundel, R Küffner, ... Bioinformatics 22 (19), 2356-2363, 2006 | 103 | 2006 |
| miRSel: automated extraction of associations between microRNAs and genes from the biomedical literature H Naeem, R Küffner, G Csaba, R Zimmer BMC bioinformatics 11 (1), 1-8, 2010 | 79 | 2010 |
| From sets to graphs: towards a realistic enrichment analysis of transcriptomic systems L Geistlinger, G Csaba, R Küffner, N Mulder, R Zimmer Bioinformatics 27 (13), i366-i373, 2011 | 66 | 2011 |
| Microarray analyses of transdifferentiated mesenchymal stem cells T Schilling, R Küffner, L Klein‐Hitpass, R Zimmer, F Jakob, N Schütze Journal of cellular biochemistry 103 (2), 413-433, 2008 | 55 | 2008 |
| Petri nets with fuzzy logic (PNFL): reverse engineering and parametrization R Küffner, T Petri, L Windhager, R Zimmer PLoS One 5 (9), e12807, 2010 | 47 | 2010 |
| On protocols and measures for the validation of supervised methods for the inference of biological networks M Schrynemackers, R Küffner, P Geurts Frontiers in genetics 4, 262, 2013 | 42 | 2013 |
| Expert knowledge without the expert: integrated analysis of gene expression and literature to derive active functional contexts R Küffner, K Fundel, R Zimmer Bioinformatics 21 (suppl_2), ii259-ii267, 2005 | 42 | 2005 |
| Being PRO-ACTive: what can a clinical trial database reveal about ALS? N Zach, DL Ennist, AA Taylor, H Alon, A Sherman, R Kueffner, J Walker, ... Neurotherapeutics 12 (2), 417-423, 2015 | 31 | 2015 |
| Rigorous assessment of gene set enrichment tests H Naeem, R Zimmer, P Tavakkolkhah, R Küffner Bioinformatics 28 (11), 1480-1486, 2012 | 31 | 2012 |
| ProSAS: a database for analyzing alternative splicing in the context of protein structures F Birzele, R Küffner, F Meier, F Oefinger, C Potthast, R Zimmer Nucleic acids research 36 (suppl_1), D63-D68, 2007 | 31 | 2007 |
| MIRTFnet: analysis of miRNA regulated transcription factors H Naeem, R Küffner, R Zimmer PloS one 6 (8), e22519, 2011 | 27 | 2011 |
| Normalization and gene p-value estimation: issues in microarray data processing K Fundel, R Küffner, T Aigner, R Zimmer Bioinformatics and biology insights 2, BBI. S441, 2008 | 24 | 2008 |
