David Langenberger, PhD
David Langenberger, PhD
Managing Director, ecSeq Bioinformatics GmbH
Verified email at - Homepage
Cited by
Cited by
microRNA Target Predictions across Seven Drosophila Species and Comparison to Mammalian Targets
D Grün, YL Wang, D Langenberger, KC Gunsalus, N Rajewsky
PLoS computational biology 1 (1), e13, 2005
Recurrent mutation of the ID3 gene in Burkitt lymphoma identified by integrated genome, exome and transcriptome sequencing
Nature genetics 44 (12), 1316-1320, 2012
Multi-Platform Next-Generation Sequencing of the Domestic Turkey (Meleagris gallopavo): Genome Assembly and Analysis
RA Dalloul, JA Long, AV Zimin, L Aslam, K Beal, L Ann Blomberg, ...
PLoS biology 8 (9), e1000475, 2010
Alu Elements in ANRIL Non-Coding RNA at Chromosome 9p21 Modulate Atherogenic Cell Functions through Trans-Regulation of Gene Networks
LM Holdt, S Hoffmann, K Sass, D Langenberger, M Scholz, K Krohn, ...
PLoS genetics 9 (7), e1003588, 2013
miRanalyzer: a microRNA detection and analysis tool for next-generation sequencing experiments
M Hackenberg, M Sturm, D Langenberger, JM Falcon-Perez, AM Aransay
Nucleic acids research 37 (suppl_2), W68-W76, 2009
A multi-split mapping algorithm for circular RNA, splicing, trans-splicing and fusion detection
S Hoffmann, C Otto, G Doose, A Tanzer, D Langenberger, S Christ, ...
Genome biology 15, 1-11, 2014
TargetSpy: a supervised machine learning approach for microRNA target prediction
M Sturm, M Hackenberg, D Langenberger, D Frishman
BMC bioinformatics 11, 1-17, 2010
Evidence for human microRNA-offset RNAs in small RNA sequencing data
D Langenberger, C Bermudez-Santana, J Hertel, S Hoffmann, ...
Bioinformatics 25 (18), 2298-2301, 2009
DNA methylome analysis in Burkitt and follicular lymphomas identifies differentially methylated regions linked to somatic mutation and transcriptional control
H Kretzmer, SH Bernhart, W Wang, A Haake, MA Weniger, AK Bergmann, ...
Nature genetics 47 (11), 1316-1325, 2015
Genomic and transcriptomic changes complement each other in the pathogenesis of sporadic Burkitt lymphoma
C López, K Kleinheinz, SM Aukema, M Rohde, SH Bernhart, ...
Nature communications 10 (1), 1459, 2019
B-cell–specific conditional expression of Myd88p.L252P leads to the development of diffuse large B-cell lymphoma in mice
G Knittel, P Liedgens, D Korovkina, JM Seeger, Y Al-Baldawi, M Al-Maarri, ...
Blood, The Journal of the American Society of Hematology 127 (22), 2732-2741, 2016
DARIO: a ncRNA detection and analysis tool for next-generation sequencing experiments
M Fasold, D Langenberger, H Binder, PF Stadler, S Hoffmann
Nucleic acids research 39 (suppl_2), W112-W117, 2011
MINCR is a MYC-induced lncRNA able to modulate MYC’s transcriptional network in Burkitt lymphoma cells
G Doose, A Haake, SH Bernhart, C López, S Duggimpudi, F Wojciech, ...
Proceedings of the National Academy of Sciences 112 (38), E5261-E5270, 2015
Identification and classification of small RNAs in transcriptome sequence data
D Langenberger, CI Bermudez-Santana, PF Stadler, S Hoffmann
Biocomputing 2010, 80-87, 2010
Dicer‐processed small RNAs: rules and exceptions
D Langenberger, MV Cakir, S Hoffmann, PF Stadler
Journal of Experimental Zoology Part B: Molecular and Developmental …, 2013
Traces of post-transcriptional RNA modifications in deep sequencing data
S Findeiß, D Langenberger, PF Stadler, S Hoffmann
Walter de Gruyter 392 (4), 305-313, 2011
In silico target network analysis of de novo-discovered, tick saliva-specific microRNAs reveals important combinatorial effects in their interference with vertebrate host …
M Hackenberg, D Langenberger, A Schwarz, J Erhart, M Kotsyfakis
Rna 23 (8), 1259-1269, 2017
MicroRNA or not MicroRNA?
D Langenberger, S Bartschat, J Hertel, S Hoffmann, H Tafer, PF Stadler
Brazilian Symposium on Bioinformatics, 1-9, 2011
The PCBP1 gene encoding poly(rc) binding protein i is recurrently mutated in Burkitt lymphoma
R Wagener, SM Aukema, M Schlesner, A Haake, B Burkhardt, A Claviez, ...
Genes, Chromosomes and Cancer 54 (9), 555-564, 2015
deepBlockAlign: a tool for aligning RNA-seq profiles of read block patterns
D Langenberger, S Pundhir, CT Ekstrøm, PF Stadler, S Hoffmann, ...
Bioinformatics 28 (1), 17-24, 2012
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