Robert J. Prill
Robert J. Prill
IBM Research
Verified email at us.ibm.com
Title
Cited by
Cited by
Year
Wisdom of crowds for robust gene network inference
D Marbach, JC Costello, R Kffner, NM Vega, RJ Prill, DM Camacho, ...
Nature methods 9 (8), 796-804, 2012
13132012
A communal catalogue reveals Earth’s multiscale microbial diversity
LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ...
Nature 551 (7681), 457-463, 2017
8742017
Revealing strengths and weaknesses of methods for gene network inference
D Marbach, RJ Prill, T Schaffter, C Mattiussi, D Floreano, G Stolovitzky
Proceedings of the national academy of sciences 107 (14), 6286-6291, 2010
7272010
A community effort to assess and improve drug sensitivity prediction algorithms
JC Costello, LM Heiser, E Georgii, M Gnen, MP Menden, NJ Wang, ...
Nature biotechnology 32 (12), 1202-1212, 2014
4962014
Towards a rigorous assessment of systems biology models: the DREAM3 challenges
RJ Prill, D Marbach, J Saez-Rodriguez, PK Sorger, LG Alexopoulos, ...
PloS one 5 (2), e9202, 2010
4202010
Dynamic properties of network motifs contribute to biological network organization
RJ Prill, PA Iglesias, A Levchenko
PLoS Biol 3 (11), e343, 2005
4142005
Geospatial resolution of human and bacterial diversity with city-scale metagenomics
E Afshinnekoo, C Meydan, S Chowdhury, D Jaroudi, C Boyer, N Bernstein, ...
Cell systems 1 (1), 72-87, 2015
2242015
Lessons from the DREAM2 challenges: a community effort to assess biological network inference
G Stolovitzky, RJ Prill, A Califano
Annals of the New York Academy of Sciences 1158 (1), 159-195, 2009
2122009
A community computational challenge to predict the activity of pairs of compounds
M Bansal, J Yang, C Karan, MP Menden, JC Costello, H Tang, G Xiao, ...
Nature biotechnology 32 (12), 1213-1222, 2014
1822014
Comprehensive benchmarking and ensemble approaches for metagenomic classifiers
ABR McIntyre, R Ounit, E Afshinnekoo, RJ Prill, E Hnaff, N Alexander, ...
Genome biology 18 (1), 1-19, 2017
1482017
Crowdsourcing network inference: the DREAM predictive signaling network challenge
RJ Prill, J Saez-Rodriguez, LG Alexopoulos, PK Sorger, G Stolovitzky
Science signaling 4 (189), mr7-mr7, 2011
1362011
Engineering receptor-mediated cytotoxicity into human ribonucleases by steric blockade of inhibitor interaction
M Suzuki, SK Saxena, E Boix, RJ Prill, VM Vasandani, JE Ladner, C Sung, ...
Nature biotechnology 17 (3), 265-270, 1999
1121999
Microbiome changes through ontogeny of a tick pathogen vector
CP Zolnik, RJ Prill, RC Falco, TJ Daniels, SO Kolokotronis
Molecular ecology 25 (19), 4963-4977, 2016
692016
Mapping the ribonucleolytic active site of eosinophil-derived neurotoxin (EDN): high resolution crystal structures of EDN complexes with adenylic nucleotide inhibitors
DD Leonidas, E Boix, R Prill, M Suzuki, R Turton, K Minson, ...
Journal of Biological Chemistry 276 (18), 15009-15017, 2001
552001
BlueSNP: R package for highly scalable genome-wide association studies using Hadoop clusters
H Huang, S Tata, RJ Prill
Bioinformatics 29 (1), 135-136, 2013
402013
Noise-driven causal inference in biomolecular networks
RJ Prill, R Vogel, GA Cecchi, G Altan-Bonnet, G Stolovitzky
PloS one 10 (6), e0125777, 2015
222015
DREAMTools: a Python package for scoring collaborative challenges
T Cokelaer, M Bansal, C Bare, E Bilal, BM Bot, EC Neto, F Eduati, ...
F1000Research 4, 2015
212015
Filthy lucre: A metagenomic pilot study of microbes found on circulating currency in New York City
JM Maritz, SA Sullivan, RJ Prill, E Aksoy, P Scheid, JM Carlton
PLoS One 12 (4), e0175527, 2017
132017
Modern methods for delineating metagenomic complexity
E Afshinnekoo, C Meydan, S Chowdhury, D Jaroudi, C Boyer, N Bernstein, ...
Cell systems 1 (1), 6-7, 2015
122015
A computational method for designing diverse linear epitopes including citrullinated peptides with desired binding affinities to intravenous immunoglobulin
R Patro, R Norel, RJ Prill, J Saez-Rodriguez, P Lorenz, F Steinbeck, ...
BMC bioinformatics 17 (1), 1-13, 2016
22016
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Articles 1–20