Torbjørn Rognes
Torbjørn Rognes
University of Oslo & Oslo University Hospital, Norway
Verified email at ifi.uio.no - Homepage
Title
Cited by
Cited by
Year
RNAmmer: consistent and rapid annotation of ribosomal RNA genes
K Lagesen, P Hallin, EA Rødland, HH Stærfeldt, T Rognes, DW Ussery
Nucleic Acids Research 35 (9), 3100-3108, 2007
40302007
VSEARCH: a versatile open source tool for metagenomics
T Rognes, T Flouri, B Nichols, C Quince, F Mahé
PeerJ 4, e2584, 2016
25292016
DNA repair in mammalian cells
AB Robertson, A Klungland, T Rognes, I Leiros
Cellular and molecular life sciences 66 (6), 981-993, 2009
6472009
Swarm: robust and fast clustering method for amplicon-based studies
F Mahé, T Rognes, C Quince, C de Vargas, M Dunthorn
PeerJ 2, 593, 2014
490*2014
Opposite base‐dependent reactions of a human base excision repair enzyme on DNA containing 7, 8‐dihydro‐8‐oxoguanine and abasic sites
M Bjørås, L Luna, B Johnsen, E Hoff, T Haug, T Rognes, E Seeberg
The EMBO journal 16 (20), 6314-6322, 1997
3711997
Six-fold speed-up of Smith–Waterman sequence database searches using parallel processing on common microprocessors
T Rognes, E Seeberg
Bioinformatics 16 (8), 699-706, 2000
2912000
Human DNA glycosylases of the bacterial Fpg/MutM superfamily: an alternative pathway for the repair of 8‐oxoguanine and other oxidation products in DNA
I Morland, V Rolseth, L Luna, T Rognes, M Bjørås, E Seeberg
Nucleic acids research 30 (22), 4926-4936, 2002
2812002
Swarm v2: highly-scalable and high-resolution amplicon clustering
F Mahé, T Rognes, C Quince, C de Vargas, M Dunthorn
PeerJ 3, e1420, 2015
2452015
Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation
T Rognes
BMC Bioinformatics 12 (1), 221, 2011
2182011
The Saccharomyces cerevisiae homologues of endonuclease III from Escherichia coli, Ntg1 and Ntg2, are both required for efficient repair of spontaneous and induced oxidative …
I Alseth, L Eide, M Pirovano, T Rognes, E Seeberg, M Bjørås
Molecular and cellular biology 19 (5), 3779-3787, 1999
1641999
Genome dynamics in major bacterial pathogens
OH Ambur, T Davidsen, SA Frye, SV Balasingham, K Lagesen, T Rognes, ...
FEMS microbiology reviews 33 (3), 453-470, 2009
1122009
Biased distribution of DNA uptake sequences towards genome maintenance genes
T Davidsen, EA Rødland, K Lagesen, E Seeberg, T Rognes, T Tønjum
Nucleic acids research 32 (3), 1050-1058, 2004
992004
Open-source sequence clustering methods improve the state of the art
E Kopylova, JA Navas-Molina, C Mercier, ZZ Xu, F Mahé, Y He, HW Zhou, ...
MSystems 1 (1), 2016
922016
ParAlign: a parallel sequence alignment algorithm for rapid and sensitive database searches
T Rognes
Nucleic acids research 29 (7), 1647-1652, 2001
882001
ALKBH1 is a histone H2A dioxygenase involved in neural differentiation
R Ougland, D Lando, I Jonson, JA Dahl, MN Moen, LM Nordstrand, ...
Stem cells 30 (12), 2672-2682, 2012
802012
Cell-cycle regulation, intracellular sorting and induced overexpression of the human NTH1 DNA glycosylase involved in removal of formamidopyrimidine residues from DNA
L Luna, M Bjørås, E Hoff, T Rognes, E Seeberg
Mutation Research/DNA Repair 460 (2), 95-104, 2000
802000
Incision at hypoxanthine residues in DNA by a mammalian homologue of the Escherichia coli antimutator enzyme endonuclease V
A Moe, J Ringvoll, LM Nordstrand, L Eide, M Bjørås, E Seeberg, ...
Nucleic acids research 31 (14), 3893-3900, 2003
742003
Predicting non-coding RNA genes in Escherichia coli with boosted genetic programming
P Sætrom, R Sneve, KI Kristiansen, O Snøve, T Grünfeld, T Rognes, ...
Nucleic acids research 33 (10), 3263-3270, 2005
682005
Characterization of novel mutations in the catalytic domain of the PCSK9 gene
J Cameron, ØL Holla, JK Laerdahl, MA Kulseth, T Ranheim, T Rognes, ...
Journal of internal medicine 263 (4), 420-431, 2008
642008
A new protein superfamily includes two novel 3‐methyladenine DNA glycosylases from Bacillus cereus, AlkC and AlkD
I Alseth, T Rognes, T Lindbäck, I Solberg, K Robertsen, KI Kristiansen, ...
Molecular microbiology 59 (5), 1602-1609, 2006
622006
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