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Stephanie J Spielman
Stephanie J Spielman
Childhood Cancer Data Lab, Alex's Lemonade Stand Foundation
Verified email at ccdatalab.org - Homepage
Title
Cited by
Cited by
Year
Datamonkey 2.0: a modern web application for characterizing selective and other evolutionary processes
S Weaver, SD Shank, SJ Spielman, M Li, SV Muse, SL Kosakovsky Pond
Molecular biology and evolution 35 (3), 773-777, 2018
4092018
Maximum allowed solvent accessibilites of residues in proteins
MZ Tien, AG Meyer, DK Sydykova, SJ Spielman, CO Wilke
PloS one 8 (11), e80635, 2013
2782013
Causes of evolutionary rate variation among protein sites
J Echave, SJ Spielman, CO Wilke
Nature Reviews Genetics 17 (2), 109-121, 2016
2132016
HyPhy 2.5—a customizable platform for evolutionary hypothesis testing using phylogenies
SL Kosakovsky Pond, AFY Poon, R Velazquez, S Weaver, NL Hepler, ...
Molecular biology and evolution 37 (1), 295-299, 2020
1442020
Regulation of clathrin-mediated endocytosis by hierarchical allosteric activation of AP2
Z Kadlecova, SJ Spielman, D Loerke, A Mohanakrishnan, DK Reed, ...
Journal of Cell Biology 216 (1), 167-179, 2017
1222017
The Relationship between dN/dS and Scaled Selection Coefficients
SJ Spielman, CO Wilke
Molecular biology and evolution 32 (4), 1097-1108, 2015
942015
Pyvolve: a flexible Python module for simulating sequences along phylogenies
SJ Spielman, CO Wilke
PloS one 10 (9), e0139047, 2015
772015
Predicting evolutionary site variability from structure in viral proteins: buriedness, packing, flexibility, and design
A Shahmoradi, DK Sydykova, SJ Spielman, EL Jackson, ET Dawson, ...
Journal of molecular evolution 79 (3), 130-142, 2014
462014
Evolution of viral genomes: Interplay between selection, recombination, and other forces
SJ Spielman, S Weaver, SD Shank, BR Magalis, M Li, ...
Evolutionary Genomics, 427-468, 2019
312019
Membrane environment imposes unique selection pressures on transmembrane domains of G protein-coupled receptors
SJ Spielman, CO Wilke
Journal of molecular evolution 76 (3), 172-182, 2013
272013
Time dependence of evolutionary metrics during the 2009 pandemic influenza virus outbreak
AG Meyer, SJ Spielman, T Bedford, CO Wilke
Virus evolution 1 (1), 2015
262015
Extensively parameterized mutation–selection models reliably capture site-specific selective constraint
SJ Spielman, CO Wilke
Molecular biology and evolution 33 (11), 2990-3002, 2016
212016
Measuring evolutionary rates of proteins in a structural context
DK Sydykova, BR Jack, SJ Spielman, CO Wilke
F1000Research 6, 2017
182017
Comprehensive, structurally-informed alignment and phylogeny of vertebrate biogenic amine receptors
SJ Spielman, K Kumar, CO Wilke
PeerJ 3, e773, 2015
172015
Relative evolutionary rate inference in HyPhy with LEISR
SJ Spielman, SL Kosakovsky Pond
PeerJ 6, e4339, 2018
162018
A Comparison of One-Rate and Two-Rate Inference Frameworks for Site-Specific dN/dS Estimation
SJ Spielman, S Wan, CO Wilke
Genetics 204 (2), 499-511, 2016
16*2016
Relative evolutionary rates in proteins are largely insensitive to the substitution model
SJ Spielman, SL Kosakovsky Pond
Molecular Biology and Evolution, 2018
142018
Limited utility of residue masking for positive-selection inference
SJ Spielman, ET Dawson, CO Wilke
Molecular biology and evolution 31 (9), 2496-2500, 2014
142014
Relative model fit does not predict topological accuracy in single-gene protein phylogenetics
SJ Spielman
Molecular biology and evolution 37 (7), 2110-2123, 2020
122020
Computational prediction of the tolerance to amino-acid deletion in green-fluorescent protein
EL Jackson, SJ Spielman, CO Wilke
PLoS One 12 (4), e0164905, 2017
112017
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