| Datamonkey 2.0: a modern web application for characterizing selective and other evolutionary processes S Weaver, SD Shank, SJ Spielman, M Li, SV Muse, SL Kosakovsky Pond Molecular biology and evolution 35 (3), 773-777, 2018 | 409 | 2018 |
| Maximum allowed solvent accessibilites of residues in proteins MZ Tien, AG Meyer, DK Sydykova, SJ Spielman, CO Wilke PloS one 8 (11), e80635, 2013 | 278 | 2013 |
| Causes of evolutionary rate variation among protein sites J Echave, SJ Spielman, CO Wilke Nature Reviews Genetics 17 (2), 109-121, 2016 | 213 | 2016 |
| HyPhy 2.5—a customizable platform for evolutionary hypothesis testing using phylogenies SL Kosakovsky Pond, AFY Poon, R Velazquez, S Weaver, NL Hepler, ... Molecular biology and evolution 37 (1), 295-299, 2020 | 144 | 2020 |
| Regulation of clathrin-mediated endocytosis by hierarchical allosteric activation of AP2 Z Kadlecova, SJ Spielman, D Loerke, A Mohanakrishnan, DK Reed, ... Journal of Cell Biology 216 (1), 167-179, 2017 | 122 | 2017 |
| The Relationship between dN/dS and Scaled Selection Coefficients SJ Spielman, CO Wilke Molecular biology and evolution 32 (4), 1097-1108, 2015 | 94 | 2015 |
| Pyvolve: a flexible Python module for simulating sequences along phylogenies SJ Spielman, CO Wilke PloS one 10 (9), e0139047, 2015 | 77 | 2015 |
| Predicting evolutionary site variability from structure in viral proteins: buriedness, packing, flexibility, and design A Shahmoradi, DK Sydykova, SJ Spielman, EL Jackson, ET Dawson, ... Journal of molecular evolution 79 (3), 130-142, 2014 | 46 | 2014 |
| Evolution of viral genomes: Interplay between selection, recombination, and other forces SJ Spielman, S Weaver, SD Shank, BR Magalis, M Li, ... Evolutionary Genomics, 427-468, 2019 | 31 | 2019 |
| Membrane environment imposes unique selection pressures on transmembrane domains of G protein-coupled receptors SJ Spielman, CO Wilke Journal of molecular evolution 76 (3), 172-182, 2013 | 27 | 2013 |
| Time dependence of evolutionary metrics during the 2009 pandemic influenza virus outbreak AG Meyer, SJ Spielman, T Bedford, CO Wilke Virus evolution 1 (1), 2015 | 26 | 2015 |
| Extensively parameterized mutation–selection models reliably capture site-specific selective constraint SJ Spielman, CO Wilke Molecular biology and evolution 33 (11), 2990-3002, 2016 | 21 | 2016 |
| Measuring evolutionary rates of proteins in a structural context DK Sydykova, BR Jack, SJ Spielman, CO Wilke F1000Research 6, 2017 | 18 | 2017 |
| Comprehensive, structurally-informed alignment and phylogeny of vertebrate biogenic amine receptors SJ Spielman, K Kumar, CO Wilke PeerJ 3, e773, 2015 | 17 | 2015 |
| Relative evolutionary rate inference in HyPhy with LEISR SJ Spielman, SL Kosakovsky Pond PeerJ 6, e4339, 2018 | 16 | 2018 |
| A Comparison of One-Rate and Two-Rate Inference Frameworks for Site-Specific dN/dS Estimation SJ Spielman, S Wan, CO Wilke Genetics 204 (2), 499-511, 2016 | 16* | 2016 |
| Relative evolutionary rates in proteins are largely insensitive to the substitution model SJ Spielman, SL Kosakovsky Pond Molecular Biology and Evolution, 2018 | 14 | 2018 |
| Limited utility of residue masking for positive-selection inference SJ Spielman, ET Dawson, CO Wilke Molecular biology and evolution 31 (9), 2496-2500, 2014 | 14 | 2014 |
| Relative model fit does not predict topological accuracy in single-gene protein phylogenetics SJ Spielman Molecular biology and evolution 37 (7), 2110-2123, 2020 | 12 | 2020 |
| Computational prediction of the tolerance to amino-acid deletion in green-fluorescent protein EL Jackson, SJ Spielman, CO Wilke PLoS One 12 (4), e0164905, 2017 | 11 | 2017 |
Claus WilkeProfessor, Department of Integrative Biology, The University of Texas at AustinVerified email at austin.utexas.edu
