Stephanie J Spielman
Stephanie J Spielman
Childhood Cancer Data Lab, Alex's Lemonade Stand Foundation
Verified email at - Homepage
Cited by
Cited by
Datamonkey 2.0: a modern web application for characterizing selective and other evolutionary processes
S Weaver, SD Shank, SJ Spielman, M Li, SV Muse, SL Kosakovsky Pond
Molecular biology and evolution 35 (3), 773-777, 2018
Maximum allowed solvent accessibilites of residues in proteins
MZ Tien, AG Meyer, DK Sydykova, SJ Spielman, CO Wilke
PloS one 8 (11), e80635, 2013
Causes of evolutionary rate variation among protein sites
J Echave, SJ Spielman, CO Wilke
Nature Reviews Genetics 17 (2), 109-121, 2016
HyPhy 2.5—a customizable platform for evolutionary hypothesis testing using phylogenies
SL Kosakovsky Pond, AFY Poon, R Velazquez, S Weaver, NL Hepler, ...
Molecular biology and evolution 37 (1), 295-299, 2020
Regulation of clathrin-mediated endocytosis by hierarchical allosteric activation of AP2
Z Kadlecova, SJ Spielman, D Loerke, A Mohanakrishnan, DK Reed, ...
Journal of Cell Biology 216 (1), 167-179, 2017
The Relationship between dN/dS and Scaled Selection Coefficients
SJ Spielman, CO Wilke
Molecular biology and evolution 32 (4), 1097-1108, 2015
Pyvolve: a flexible Python module for simulating sequences along phylogenies
SJ Spielman, CO Wilke
PloS one 10 (9), e0139047, 2015
Predicting evolutionary site variability from structure in viral proteins: buriedness, packing, flexibility, and design
A Shahmoradi, DK Sydykova, SJ Spielman, EL Jackson, ET Dawson, ...
Journal of molecular evolution 79 (3), 130-142, 2014
Evolution of viral genomes: Interplay between selection, recombination, and other forces
SJ Spielman, S Weaver, SD Shank, BR Magalis, M Li, ...
Evolutionary Genomics, 427-468, 2019
Membrane environment imposes unique selection pressures on transmembrane domains of G protein-coupled receptors
SJ Spielman, CO Wilke
Journal of molecular evolution 76 (3), 172-182, 2013
Time dependence of evolutionary metrics during the 2009 pandemic influenza virus outbreak
AG Meyer, SJ Spielman, T Bedford, CO Wilke
Virus evolution 1 (1), 2015
Extensively parameterized mutation–selection models reliably capture site-specific selective constraint
SJ Spielman, CO Wilke
Molecular biology and evolution 33 (11), 2990-3002, 2016
Measuring evolutionary rates of proteins in a structural context
DK Sydykova, BR Jack, SJ Spielman, CO Wilke
F1000Research 6, 2017
Comprehensive, structurally-informed alignment and phylogeny of vertebrate biogenic amine receptors
SJ Spielman, K Kumar, CO Wilke
PeerJ 3, e773, 2015
Relative evolutionary rate inference in HyPhy with LEISR
SJ Spielman, SL Kosakovsky Pond
PeerJ 6, e4339, 2018
A Comparison of One-Rate and Two-Rate Inference Frameworks for Site-Specific dN/dS Estimation
SJ Spielman, S Wan, CO Wilke
Genetics 204 (2), 499-511, 2016
Relative evolutionary rates in proteins are largely insensitive to the substitution model
SJ Spielman, SL Kosakovsky Pond
Molecular Biology and Evolution, 2018
Limited utility of residue masking for positive-selection inference
SJ Spielman, ET Dawson, CO Wilke
Molecular biology and evolution 31 (9), 2496-2500, 2014
Relative model fit does not predict topological accuracy in single-gene protein phylogenetics
SJ Spielman
Molecular biology and evolution 37 (7), 2110-2123, 2020
Computational prediction of the tolerance to amino-acid deletion in green-fluorescent protein
EL Jackson, SJ Spielman, CO Wilke
PLoS One 12 (4), e0164905, 2017
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