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Kostas Konstantinidis
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DNA–DNA hybridization values and their relationship to whole-genome sequence similarities
J Goris, KT Konstantinidis, JA Klappenbach, T Coenye, P Vandamme, ...
International journal of systematic and evolutionary microbiology 57 (1), 81-91, 2007
44622007
High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries
C Jain, LM Rodriguez-R, AM Phillippy, KT Konstantinidis, S Aluru
Nature communications 9 (1), 5114, 2018
34632018
Genomic insights that advance the species definition for prokaryotes
KT Konstantinidis, JM Tiedje
Proceedings of the National Academy of Sciences 102 (7), 2567-2572, 2005
21982005
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
RM Bowers, NC Kyrpides, R Stepanauskas, M Harmon-Smith, D Doud, ...
Nature biotechnology 35 (8), 725-731, 2017
16922017
The enveomics collection: a toolbox for specialized analyses of microbial genomes and metagenomes
LM Rodriguez-R, KT Konstantinidis
PeerJ Preprints, 2016
12602016
Towards a genome-based taxonomy for prokaryotes
KT Konstantinidis, JM Tiedje
Journal of bacteriology 187 (18), 6258-6264, 2005
11202005
Strengths and limitations of 16S rRNA gene amplicon sequencing in revealing temporal microbial community dynamics
R Poretsky, LM Rodriguez-R, C Luo, D Tsementzi, KT Konstantinidis
PloS one 9 (4), e93827, 2014
7712014
The bacterial species definition in the genomic era
KT Konstantinidis, A Ramette, JM Tiedje
Philosophical Transactions of the Royal Society B: Biological Sciences 361 …, 2006
7672006
Bypassing cultivation to identify bacterial species
LM Rodriguez-R, KT Konstantinidis
Microbe 9 (3), 111-118, 2014
7372014
Microbial species delineation using whole genome sequences
NJ Varghese, S Mukherjee, N Ivanova, KT Konstantinidis, K Mavrommatis, ...
Nucleic acids research 43 (14), 6761-6771, 2015
7212015
Unexpected nondenitrifier nitrous oxide reductase gene diversity and abundance in soils
RA Sanford, DD Wagner, Q Wu, JC Chee-Sanford, SH Thomas, ...
Proceedings of the National Academy of Sciences 109 (48), 19709-19714, 2012
6672012
Direct comparisons of Illumina vs. Roche 454 sequencing technologies on the same microbial community DNA sample
C Luo, D Tsementzi, N Kyrpides, T Read, KT Konstantinidis
PloS one 7 (2), e30087, 2012
6642012
Uncultivated microbes in need of their own taxonomy
KT Konstantinidis, R Rosselló-Móra, R Amann
The ISME journal 11 (11), 2399-2406, 2017
6392017
Dehalococcoides mccartyi gen. nov., sp. nov., obligately organohalide-respiring anaerobic bacteria relevant to halogen cycling and bioremediation, belong to a novel bacterial …
FE Löffler, J Yan, KM Ritalahti, L Adrian, EA Edwards, KT Konstantinidis, ...
International journal of systematic and evolutionary microbiology 63 (Pt_2 …, 2013
6382013
Trends between gene content and genome size in prokaryotic species with larger genomes
KT Konstantinidis, JM Tiedje
Proceedings of the National Academy of Sciences 101 (9), 3160-3165, 2004
5502004
Genomic analysis of the uncultivated marine crenarchaeote Cenarchaeum symbiosum
SJ Hallam, KT Konstantinidis, N Putnam, C Schleper, Y Watanabe, ...
Proceedings of the National Academy of Sciences 103 (48), 18296-18301, 2006
5352006
Microbiome of the upper troposphere: species composition and prevalence, effects of tropical storms, and atmospheric implications
N DeLeon-Rodriguez, TL Lathem, LM Rodriguez-R, JM Barazesh, ...
Proceedings of the National Academy of Sciences 110 (7), 2575-2580, 2013
4892013
MyTaxa: an advanced taxonomic classifier for genomic and metagenomic sequences
C Luo, LM Rodriguez-r, KT Konstantinidis
Nucleic acids research 42 (8), e73-e73, 2014
4882014
The Microbial Genomes Atlas (MiGA) webserver: taxonomic and gene diversity analysis of Archaea and Bacteria at the whole genome level
LM Rodriguez-R, S Gunturu, WT Harvey, R Rosselló-Mora, JM Tiedje, ...
Nucleic acids research 46 (W1), W282-W288, 2018
4822018
Prokaryotic taxonomy and phylogeny in the genomic era: advancements and challenges ahead
KT Konstantinidis, JM Tiedje
Current opinion in microbiology 10 (5), 504-509, 2007
4612007
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