Stefan Niemann
Title
Cited by
Cited by
Year
Proposal for standardization of optimized mycobacterial interspersed repetitive unit-variable-number tandem repeat typing of Mycobacterium tuberculosis
P Supply, C Allix, S Lesjean, M Cardoso-Oelemann, S Rüsch-Gerdes, ...
Journal of clinical microbiology 44 (12), 4498-4510, 2006
14702006
Mycobacterium tuberculosis complex genetic diversity: mining the fourth international spoligotyping database (SpolDB4) for classification, population genetics and …
K Brudey, JR Driscoll, L Rigouts, WM Prodinger, A Gori, SA Al-Hajoj, ...
BMC microbiology 6 (1), 23, 2006
11922006
Variable host–pathogen compatibility in Mycobacterium tuberculosis
S Gagneux, K DeRiemer, T Van, M Kato-Maeda, BC De Jong, ...
Proceedings of the National Academy of Sciences 103 (8), 2869-2873, 2006
10522006
Out-of-Africa migration and Neolithic coexpansion of Mycobacterium tuberculosis with modern humans
I Comas, M Coscolla, T Luo, S Borrell, KE Holt, M Kato-Maeda, J Parkhill, ...
Nature genetics 45 (10), 1176-1182, 2013
8582013
Human T cell epitopes of Mycobacterium tuberculosis are evolutionarily hyperconserved
I Comas, J Chakravartti, PM Small, J Galagan, S Niemann, K Kremer, ...
Nature genetics 42 (6), 498-503, 2010
6382010
High functional diversity in Mycobacterium tuberculosis driven by genetic drift and human demography
R Hershberg, M Lipatov, PM Small, H Sheffer, S Niemann, S Homolka, ...
PLoS Biol 6 (12), e311, 2008
6202008
Origin, spread and demography of the Mycobacterium tuberculosis complex
T Wirth, F Hildebrand, C Allix-Béguec, F Wölbeling, T Kubica, K Kremer, ...
PLoS Pathog 4 (9), e1000160, 2008
5382008
Predictive value of a whole blood IFN-γ assay for the development of active tuberculosis disease after recent infection with Mycobacterium tuberculosis
R Diel, R Loddenkemper, K Meywald-Walter, S Niemann, A Nienhaus
American journal of respiratory and critical care medicine 177 (10), 1164-1170, 2008
5112008
Whole-genome sequencing of rifampicin-resistant Mycobacterium tuberculosis strains identifies compensatory mutations in RNA polymerase genes
I Comas, S Borrell, A Roetzer, G Rose, B Malla, M Kato-Maeda, J Galagan, ...
Nature genetics 44 (1), 106-110, 2012
4752012
Genotyping of genetically monomorphic bacteria: DNA sequencing in Mycobacterium tuberculosis highlights the limitations of current methodologies
I Comas, S Homolka, S Niemann, S Gagneux
PloS one 4 (11), e7815, 2009
4622009
Whole genome sequencing versus traditional genotyping for investigation of a Mycobacterium tuberculosis outbreak: a longitudinal molecular epidemiological study
A Roetzer, R Diel, TA Kohl, C Rückert, U Nübel, J Blom, T Wirth, ...
PLoS Med 10 (2), e1001387, 2013
4502013
Evaluation and strategy for use of MIRU-VNTRplus, a multifunctional database for online analysis of genotyping data and phylogenetic identification of Mycobacterium …
C Allix-Béguec, D Harmsen, T Weniger, P Supply, S Niemann
Journal of clinical microbiology 46 (8), 2692-2699, 2008
4502008
Pre-Columbian mycobacterial genomes reveal seals as a source of New World human tuberculosis
KI Bos, KM Harkins, A Herbig, M Coscolla, N Weber, I Comas, SA Forrest, ...
Nature 514 (7523), 494-497, 2014
4162014
Whole-genome sequencing for prediction of Mycobacterium tuberculosis drug susceptibility and resistance: a retrospective cohort study
TM Walker, TA Kohl, SV Omar, J Hedge, CDO Elias, P Bradley, Z Iqbal, ...
The Lancet infectious diseases 15 (10), 1193-1202, 2015
3992015
Evolutionary history and global spread of the Mycobacterium tuberculosis Beijing lineage
M Merker, C Blin, S Mona, N Duforet-Frebourg, S Lecher, E Willery, ...
Nature genetics 47 (3), 242-249, 2015
3952015
The epidemiology, pathogenesis, transmission, diagnosis, and management of multidrug-resistant, extensively drug-resistant, and incurable tuberculosis
K Dheda, T Gumbo, G Maartens, KE Dooley, R McNerney, M Murray, ...
The lancet Respiratory medicine 5 (4), 291-360, 2017
3892017
Rapid antibiotic-resistance predictions from genome sequence data for Staphylococcus aureus and Mycobacterium tuberculosis
P Bradley, NC Gordon, TM Walker, L Dunn, S Heys, B Huang, S Earle, ...
Nature communications 6 (1), 1-15, 2015
3622015
MIRU-VNTRplus: a web tool for polyphasic genotyping of Mycobacterium tuberculosis complex bacteria
T Weniger, J Krawczyk, P Supply, S Niemann, D Harmsen
Nucleic acids research 38 (suppl_2), W326-W331, 2010
3622010
Negative and positive predictive value of a whole-blood interferon-γ release assay for developing active tuberculosis: an update
R Diel, R Loddenkemper, S Niemann, K Meywald-Walter, A Nienhaus
American journal of respiratory and critical care medicine 183 (1), 88-95, 2011
3492011
Common patterns and disease-related signatures in tuberculosis and sarcoidosis
J Maertzdorf, J Weiner, HJ Mollenkopf, T Network, T Bauer, A Prasse, ...
Proceedings of the National Academy of Sciences 109 (20), 7853-7858, 2012
3142012
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