| Free energy analysis of membrane pore formation process in the presence of multiple melittin peptides Y Miyazaki, S Okazaki, W Shinoda Biochimica et Biophysica Acta (BBA)-Biomembranes 1861 (7), 1409-1419, 2019 | 29 | 2019 |
| SPICA force field for proteins and peptides S Kawamoto, H Liu, Y Miyazaki, S Seo, M Dixit, R DeVane, ... Journal of Chemical Theory and Computation 18 (5), 3204-3217, 2022 | 21 | 2022 |
| pSpica: a coarse-grained force field for lipid membranes based on a polar water model Y Miyazaki, S Okazaki, W Shinoda Journal of Chemical Theory and Computation 16 (1), 782-793, 2019 | 15 | 2019 |
| Cooperative antimicrobial action of melittin on lipid membranes: A coarse-grained molecular dynamics study Y Miyazaki, W Shinoda Biochimica et Biophysica Acta (BBA)-Biomembranes 1864 (9), 183955, 2022 | 13 | 2022 |
| Self-Assembly of Glycerol-Amphiphilic Janus Dendrimers Amplifies and Indicates Principles for the Selection of Stereochemistry by Biological Membranes D Zhang, Q Xiao, M Rahimzadeh, M Liu, C Rodriguez-Emmenegger, ... Journal of the American Chemical Society 145 (7), 4311-4323, 2023 | 10 | 2023 |
| Large-scale molecular dynamics simulation of perfluorosulfonic acid membranes: remapping coarse-grained to all-atomistic simulations AT Kuo, Y Miyazaki, C Jang, T Miyajima, S Urata, SO Nielsen, S Okazaki, ... polymer 181, 121766, 2019 | 10 | 2019 |
| Average conformation of branched chain lipid PGP-Me that accounts for the thermal stability and high-salinity resistance of archaeal membranes M Yamagami, H Tsuchikawa, J Cui, Y Umegawa, Y Miyazaki, S Seo, ... Biochemistry 58 (37), 3869-3879, 2019 | 9 | 2019 |
| Complex Energy Landscapes of Self-Assembled Vesicles J Luan, D Wang, S Zhang, Y Miyazaki, W Shinoda, DA Wilson Journal of the American Chemical Society 145 (28), 15496-15506, 2023 | 5 | 2023 |
| Improved protein model in SPICA force field T Yamada, Y Miyazaki, S Harada, A Kumar, S Vanni, W Shinoda Journal of Chemical Theory and Computation 19 (23), 8967-8977, 2023 | 4 | 2023 |
| Understanding the effects of ethanol on the liposome bilayer structure using microfluidic-based time-resolved small-angle X-ray scattering and molecular dynamics simulations M Maeki, N Kimura, Y Okada, K Shimizu, K Shibata, Y Miyazaki, A Ishida, ... Nanoscale Advances, 2024 | 1* | 2024 |
| Mutation detection of urinary cell-free DNA via catch-and-release isolation on nanowires for liquid biopsy H Takahashi, T Yasui, M Hirano, K Shinjo, Y Miyazaki, W Shinoda, ... Biosensors and Bioelectronics 234, 115318, 2023 | 1 | 2023 |
| Recovering hidden dynamical modes from the generalized Langevin equation S Kawai, Y Miyazaki The Journal of Chemical Physics 145 (9), 2016 | 1 | 2016 |
| Light-controllable cell-membrane disturbance for intracellular delivery W Huo, K Miki, H Mu, T Osawa, H Yamaguma, Y Kasahara, S Obika, ... Journal of Materials Chemistry B, 2024 | | 2024 |
| pSPICA Force Field Extended for Proteins and Peptides Y Miyazaki, W Shinoda Journal of Chemical Information and Modeling 64 (2), 532-542, 2023 | | 2023 |
| HER‐2‐Targeted Boron Neutron Capture Therapy with Carborane‐integrated Immunoliposomes Prepared via an Exchanging Reaction R Kawasaki, A Oshige, K Yamana, H Hirano, K Nishimura, Y Miura, ... Chemistry–A European Journal 29 (72), e202302486, 2023 | | 2023 |
