Zhenfeng Liu
Zhenfeng Liu
Bioinformatic Scientist at Zymo Research
Verified email at zymoresearch.com - Homepage
Title
Cited by
Cited by
Year
Comparative and Functional Genomics of Anoxygenic Green Bacteria from the Taxa Chlorobi, Chloroflexi, and Acidobacteria
DA Bryant, Z Liu, T Li, F Zhao, AMG Costas, CG Klatt, DM Ward, ...
Functional genomics and evolution of photosynthetic systems, 47-102, 2012
127*2012
Complete genome of Ignavibacterium album, a metabolically versatile, flagellated, facultative anaerobe from the phylum Chlorobi
Z Liu, NU Frigaard, K Vogl, T Iino, M Ohkuma, J Overmann, DA Bryant
Frontiers in microbiology 3, 185, 2012
1142012
Metatranscriptomic analyses of chlorophototrophs of a hot-spring microbial mat
Z Liu, CG Klatt, JM Wood, DB Rusch, M Ludwig, N Wittekindt, LP Tomsho, ...
The ISME journal 5 (8), 1279-1290, 2011
882011
Complete genome of Candidatus Chloracidobacterium thermophilum, a chlorophyll‐based photoheterotroph belonging to the phylum Acidobacteria
AM Garcia Costas, Z Liu, LP Tomsho, SC Schuster, DM Ward, DA Bryant
Environmental Microbiology 14 (1), 177-190, 2012
742012
Temporal metatranscriptomic patterning in phototrophic Chloroflexi inhabiting a microbial mat in a geothermal spring
CG Klatt, Z Liu, M Ludwig, M Kühl, SI Jensen, DA Bryant, DM Ward
The ISME journal 7 (9), 1775-1789, 2013
662013
‘Candidatus Thermochlorobacter aerophilum:’an aerobic chlorophotoheterotrophic member of the phylum Chlorobi defined by metagenomics and metatranscriptomics
Z Liu, CG Klatt, M Ludwig, DB Rusch, SI Jensen, M Kühl, DM Ward, ...
The ISME journal 6 (10), 1869-1882, 2012
662012
Investigating microbial eukaryotic diversity from a global census: insights from a comparison of pyrotag and full-length sequences of 18S rRNA genes
AAY Lie, Z Liu, SK Hu, AC Jones, DY Kim, PD Countway, ...
Applied and environmental microbiology 80 (14), 4363-4373, 2014
592014
Protistan diversity and activity inferred from RNA and DNA at a coastal ocean site in the eastern North Pacific
SK Hu, V Campbell, P Connell, AG Gellene, Z Liu, R Terrado, DA Caron
FEMS Microbiology Ecology 92 (4), fiw050, 2016
522016
Estimating protistan diversity using high‐throughput sequencing
SK Hu, Z Liu, AAY Lie, PD Countway, DY Kim, AC Jones, RJ Gast, ...
Journal of Eukaryotic Microbiology 62 (5), 688-693, 2015
312015
Green bacteria: insights into green bacterial evolution through genomic analyses
DA Bryant, Z Liu
Advances in botanical research 66, 99-150, 2013
302013
Gene expression in the mixotrophic prymnesiophyte, Prymnesium parvum, responds to prey availability
Z Liu, AC Jones, V Campbell, KD Hambright, KB Heidelberg, DA Caron
Frontiers in microbiology 6, 319, 2015
282015
Genomic analysis reveals key aspects of prokaryotic symbiosis in the phototrophic consortium “Chlorochromatium aggregatum
Z Liu, J Müller, T Li, RM Alvey, K Vogl, NU Frigaard, NC Rockwell, ...
Genome biology 14 (11), R127, 2013
282013
Multiple types of 8-vinyl reductases for (bacterio) chlorophyll biosynthesis occur in many green sulfur bacteria
Z Liu, DA Bryant
Journal of bacteriology 193 (18), 4996-4998, 2011
262011
Changes in gene expression of Prymnesium parvum induced by nitrogen and phosphorus limitation
R Terrado, V Campbell, DA Caron, KB Heidelberg
Frontiers in microbiology 6, 631, 2015
252015
Comparative transcriptome analysis of four prymnesiophyte algae
AE Koid, Z Liu, R Terrado, AC Jones, DA Caron, KB Heidelberg
PLoS One 9 (6), e97801, 2014
252014
Gene expression characterizes different nutritional strategies among three mixotrophic protists
Z Liu, V Campbell, KB Heidelberg, DA Caron
FEMS Microbiology Ecology 92 (7), fiw106, 2016
242016
Identification of a gene essential for the first committed step in the biosynthesis of bacteriochlorophyll c
Z Liu, DA Bryant
Journal of Biological Chemistry 286 (25), 22393-22402, 2011
232011
Speciation and ecological success in dimly lit waters: horizontal gene transfer in a green sulfur bacteria bloom unveiled by metagenomic assembly
T Llorens–Marès, Z Liu, LZ Allen, DB Rusch, MT Craig, CL Dupont, ...
The ISME journal 11 (1), 201-211, 2017
212017
The physiological functions and structural determinants of catalytic bias in the [FeFe]-hydrogenases CpI and CpII of Clostridium pasteurianum strain W5
JB Therien, JH Artz, S Poudel, TL Hamilton, Z Liu, SM Noone, ...
Frontiers in microbiology 8, 1305, 2017
182017
Single-cell transcriptomics of small microbial eukaryotes: limitations and potential
Z Liu, SK Hu, V Campbell, AO Tatters, KB Heidelberg, DA Caron
The ISME journal 11 (5), 1282-1285, 2017
182017
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Articles 1–20