Tobias Jakobi
Tobias Jakobi
Postdoctoral fellow | Heidelberg University | Bioinformatics & Systems Cardiology
Verified email at med.uni-heidelberg.de - Homepage
Title
Cited by
Cited by
Year
Large-scale compression of genomic sequence databases with the Burrows–Wheeler transform
AJ Cox, MJ Bauer, T Jakobi, G Rosone
Bioinformatics 28 (11), 1415-1419, 2012
1342012
Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming
J Blom, T Jakobi, D Doppmeier, S Jaenicke, J Kalinowski, J Stoye, ...
Bioinformatics 27 (10), 1351-1358, 2011
1162011
Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing
J Becker, M Hackl, O Rupp, T Jakobi, J Schneider, R Szczepanowski, ...
Journal of biotechnology 156 (3), 227-235, 2011
1072011
Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
M Hackl, T Jakobi, J Blom, D Doppmeier, K Brinkrolf, R Szczepanowski, ...
Journal of biotechnology 153 (1-2), 62-75, 2011
1072011
Profiling and validation of the circular RNA repertoire in adult murine hearts
T Jakobi, LF Czaja-Hasse, R Reinhardt, C Dieterich
Genomics, proteomics & bioinformatics 14 (4), 216-223, 2016
582016
Integrin-linked kinase regulates the niche of quiescent epidermal stem cells
J Morgner, S Ghatak, T Jakobi, C Dieterich, M Aumailley, SA Wickström
Nature communications 6 (1), 1-15, 2015
532015
Computational identification of microRNA gene loci and precursor microRNA sequences in CHO cell lines
M Hackl, V Jadhav, T Jakobi, O Rupp, K Brinkrolf, A Goesmann, A Pühler, ...
Journal of biotechnology 158 (3), 151-155, 2012
482012
ATF6 regulates cardiac hypertrophy by transcriptional induction of the mTORC1 activator, Rheb
EA Blackwood, C Hofmann, M Santo Domingo, AS Bilal, A Sarakki, ...
Circulation research 124 (1), 79-93, 2019
282019
Comparing DNA sequence collections by direct comparison of compressed text indexes
AJ Cox, T Jakobi, G Rosone, OB Schulz-Trieglaff
International Workshop on Algorithms in Bioinformatics, 214-224, 2012
232012
Computational approaches for circular RNA analysis
T Jakobi, C Dieterich
Wiley Interdisciplinary Reviews: RNA 10 (3), e1528, 2019
172019
TRUNCATULIX–a data warehouse for the legume community
K Henckel, KJ Runte, T Bekel, M Dondrup, T Jakobi, H Küster, ...
BMC plant biology 9 (1), 19, 2009
162009
circtools—a one-stop software solution for circular RNA research
T Jakobi, A Uvarovskii, C Dieterich
Bioinformatics 35 (13), 2326-2328, 2019
132019
Deep computational circular RNA analytics from RNA-seq data
T Jakobi, C Dieterich
Circular RNAs, 9-25, 2018
122018
Discovery of transcription start sites in the Chinese hamster genome by next-generation RNA sequencing
T Jakobi, K Brinkrolf, A Tauch, T Noll, J Stoye, A Pühler, A Goesmann
Journal of biotechnology 190, 64-75, 2014
82014
Monitoring cell-type–specific gene expression using ribosome profiling in vivo during cardiac hemodynamic stress
S Doroudgar, C Hofmann, E Boileau, B Malone, E Riechert, AA Gorska, ...
Circulation research 125 (4), 431-448, 2019
62019
Early response of Sulfolobus acidocaldarius to nutrient limitation
LF Bischof, MF Haurat, L Hoffmann, A Albersmeier, J Wolf, A Neu, ...
Frontiers in microbiology 9, 3201, 2019
52019
Comparison of acceleration techniques for selected low-level bioinformatics operations
D Langenkämper, T Jakobi, D Feld, L Jelonek, A Goesmann, ...
Frontiers in genetics 7, 5, 2016
32016
Identification of Methylated Transcripts Using the TRIBE Approach
L Worpenberg, T Jakobi, C Dieterich, JY Roignant
Epitranscriptomics, 89-106, 2019
22019
Proteomic analysis of the cardiac myocyte secretome reveals extracellular protective functions for the ER stress response
EA Blackwood, DJ Thuerauf, M Stastna, H Stephens, Z Sand, A Pentoney, ...
Journal of Molecular and Cellular Cardiology, 2020
12020
TRUNCATULIX–a data warehouse for the legume community
H Kolja, R Kai, B Thomas, D Michael, J Tobias, K Helge, G Alexander
BMC Plant Biology 9, 2009
12009
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