Tobias Jakobi
Tobias Jakobi
Assistant Professor | University of Arizona College of Medicine Phoenix
Verified email at - Homepage
Cited by
Cited by
Large-scale compression of genomic sequence databases with the Burrows–Wheeler transform
AJ Cox, MJ Bauer, T Jakobi, G Rosone
Bioinformatics 28 (11), 1415-1419, 2012
Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing
J Becker, M Hackl, O Rupp, T Jakobi, J Schneider, R Szczepanowski, ...
Journal of biotechnology 156 (3), 227-235, 2011
Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
M Hackl, T Jakobi, J Blom, D Doppmeier, K Brinkrolf, R Szczepanowski, ...
Journal of biotechnology 153 (1-2), 62-75, 2011
Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming
J Blom, T Jakobi, D Doppmeier, S Jaenicke, J Kalinowski, J Stoye, ...
Bioinformatics 27 (10), 1351-1358, 2011
Profiling and validation of the circular RNA repertoire in adult murine hearts
T Jakobi, LF Czaja-Hasse, R Reinhardt, C Dieterich
Genomics, proteomics and bioinformatics 14 (4), 216-223, 2016
Integrin-linked kinase regulates the niche of quiescent epidermal stem cells
J Morgner, S Ghatak, T Jakobi, C Dieterich, M Aumailley, SA Wickström
Nature communications 6 (1), 8198, 2015
ATF6 regulates cardiac hypertrophy by transcriptional induction of the mTORC1 activator, Rheb
EA Blackwood, C Hofmann, M Santo Domingo, AS Bilal, A Sarakki, ...
Circulation research 124 (1), 79-93, 2019
Computational approaches for circular RNA analysis
T Jakobi, C Dieterich
Wiley Interdisciplinary Reviews: RNA 10 (3), e1528, 2019
Computational identification of microRNA gene loci and precursor microRNA sequences in CHO cell lines
M Hackl, V Jadhav, T Jakobi, O Rupp, K Brinkrolf, A Goesmann, A Pühler, ...
Journal of Biotechnology 158 (3), 151-155, 2012
Monitoring cell-type–specific gene expression using ribosome profiling in vivo during cardiac hemodynamic stress
S Doroudgar, C Hofmann, E Boileau, B Malone, E Riechert, AA Gorska, ...
Circulation research 125 (4), 431-448, 2019
circtools—a one-stop software solution for circular RNA research
T Jakobi, A Uvarovskii, C Dieterich
Bioinformatics 35 (13), 2326-2328, 2019
ADAR-deficiency perturbs the global splicing landscape in mouse tissues
U Kapoor, K Licht, F Amman, T Jakobi, D Martin, C Dieterich, MF Jantsch
Genome research 30 (8), 1107-1118, 2020
Increased susceptibility of human endothelial cells to infections by SARS-CoV-2 variants
JUG Wagner, D Bojkova, M Shumliakivska, G Luxán, L Nicin, GS Aslan, ...
Basic Research in Cardiology 116, 1-12, 2021
Deep characterization of circular RNAs from human cardiovascular cell models and cardiac tissue
T Jakobi, D Siede, J Eschenbach, AW Heumüller, M Busch, R Nietsch, ...
Cells 9 (7), 1616, 2020
Early Response of Sulfolobus acidocaldarius to Nutrient Limitation
LF Bischof, MF Haurat, L Hoffmann, A Albersmeier, J Wolf, A Neu, ...
Frontiers in Microbiology 9, 3201, 2019
Comparing DNA sequence collections by direct comparison of compressed text indexes
AJ Cox, T Jakobi, G Rosone, OB Schulz-Trieglaff
Algorithms in Bioinformatics: 12th International Workshop, WABI 2012 …, 2012
Deep computational circular RNA analytics from RNA-seq data
T Jakobi, C Dieterich
Circular RNAs: Methods and Protocols, 9-25, 2018
Large-scale benchmarking of circRNA detection tools reveals large differences in sensitivity but not in precision
M Vromman, J Anckaert, S Bortoluzzi, A Buratin, CY Chen, Q Chu, ...
Nature methods 20 (8), 1159-1169, 2023
Proteomic analysis of the cardiac myocyte secretome reveals extracellular protective functions for the ER stress response
EA Blackwood, DJ Thuerauf, M Stastna, H Stephens, Z Sand, A Pentoney, ...
Journal of molecular and cellular cardiology 143, 132-144, 2020
TRUNCATULIX–a data warehouse for the legume community
K Henckel, KJ Runte, T Bekel, M Dondrup, T Jakobi, H Küster, ...
BMC plant biology 9, 1-11, 2009
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