Davide Chiarugi

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Moreno FalaschiProfessor of Computer ScienceVerified email at unisi.it
Carlos OlarteAssociate Professor at Université Sorbonne Paris NordVerified email at lipn.univ-paris13.fr
CHIARA BODEIComputer Science Associate Professor, University of PisaVerified email at unipi.it
Roberto MarangoniDepartment of Biology, University of Pisa, Italy and Institute of Biophysics of the CNR, ItalyVerified email at unipi.it
Angelo VallerianiMax Planck Institute of Colloids and Interfaces, Dept of Theory and Bio-SystemsVerified email at mpikg.mpg.de
Celine SinMax Perutz LabsVerified email at cemm.at
Andrea BraccialiSICSA Lecturer, Stirling UniversityVerified email at cs.stir.ac.uk
Antonio Vidal-puigProf Molecular Nutrition and Metabolism, Univeristy of CambridgeVerified email at cam.ac.uk
Linda Brododoctor of computer science, Sassari universityVerified email at uniss.it
Catuscia PalamidessiInriaVerified email at lix.polytechnique.fr
Paolo ParadisiResearch scientist, ISTI-CNR,PisaVerified email at isti.cnr.it
Paolo AllegriniSSSUP, CNR, Cambridge, Duke, UNIPI, INFM, UNT, NISTVerified email at istruzione.it
Alessandro RomanelDepartment of Cellular, Computational and Integrative (CIBIO), University of Trento, ItalyVerified email at unitn.it
Alberto PolicritiUniversity of UdineVerified email at uniud.it
Luca BortolussiUniversità di TriesteVerified email at units.it
Jan Bert van KlinkenAmsterdam University Medical Centre & Leiden University Medical CentreVerified email at lumc.nl

Davide Chiarugi

Institute of Metabolic Science, University of Cambridge

Verified email at cam.ac.uk - Homepage

Data Science Computational Biology Biostatistics Stochastic models of Biological systems Stochastic processes


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Glucose-dependent insulinotropic polypeptide receptor-expressing cells in the hypothalamus regulate food intake AE Adriaenssens, EK Biggs, T Darwish, J Tadross, T Sukthankar, M Girish, ... Cell metabolism 30 (5), 987-996. e6, 2019	81	2019
Comparison of Human and Murine Enteroendocrine Cells by Transcriptomic and Peptidomic Profiling GP Roberts, P Larraufie, P Richards, RG Kay, SG Galvin, ... Diabetes 68 (5), 1062-1072, 2019	76	2019
Quantitative assessment of ribosome drop-off in E. coli DCAV Celine Sin Nucleic acid research, 2016	49	2016
Vice: A virtual cell D Chiarugi, M Curti, P Degano, R Marangoni International Conference on Computational Methods in Systems Biology, 207-220, 2004	35	2004
A computational approach to the functional screening of genomes D Chiarugi, P Degano, R Marangoni PLoS Computational Biology 3 (9), e174, 2007	23	2007
Lipid remodeling in hepatocyte proliferation and hepatocellular carcinoma Z Hall, D Chiarugi, E Charidemou, J Leslie, E Scott, L Pellegrinet, ... Hepatology 73 (3), 1028-1044, 2021	21	2021
A proof theoretic view of spatial and temporal dependencies in biochemical systems C Olarte, D Chiarugi, M Falaschi, D Hermith Theoretical Computer Science 641, 25-42, 2016	17	2016
Formal Methods for Computational Systems Biology: 8th International School on Formal Methods for the Design of Computer, Communication, and Software Systems, SFM 2008 Bertinoro … M Bernardo, P Degano, G Zavattaro Springer, 2008	17	2008
Interleukin-33 signaling controls the development of iron-recycling macrophages Y Lu, G Basatemur, IC Scott, D Chiarugi, M Clement, J Harrison, ... Immunity 52 (5), 782-793. e5, 2020	16	2020
On deducing causality in metabolic networks C Bodei, A Bracciali, D Chiarugi BMC bioinformatics 9 (4), 1-10, 2008	16	2008
A renewal model for the emergence of anomalous solute crowding in liposomes P Paradisi, P Allegrini, D Chiarugi BMC Systems Biology 9 (3), 1-8, 2015	15	2015
Modelling non-Markovian dynamics in biochemical reactions D Chiarugi, M Falaschi, D Hermith, C Olarte, L Torella BMC systems biology 9 (3), 1-13, 2015	13	2015
A flat process calculus for nested membrane interactions C Bodei, B Linda, R Bruni, C Davide Scientific Annals of Computer Science 24 (1), 91-136, 2014	13	2014
Compositional modelling of signalling pathways in timed concurrent constraint programming D Chiarugi, M Falaschi, C Olarte, C Palamidessi Proceedings of the First ACM International Conference on Bioinformatics and …, 2010	13	2010
Degradation parameters from pulse-chase experiments C Sin, D Chiarugi, A Valleriani PLoS one 11 (5), e0155028, 2016	10	2016
Verification of spatial and temporal modalities in biochemical systems D Chiarugi, M Falaschi, D Hermith, C Olarte Electronic Notes in Theoretical Computer Science 316, 29-44, 2015	9	2015
Single-molecule modeling of mRNA degradation by miRNA: Lessons from data C Sin, D Chiarugi, A Valleriani BMC Systems Biology 9, S2, 2015	8	2015
Feedbacks and oscillations in the virtual cell VICE D Chiarugi, M Chinellato, P Degano, GL Brutto, R Marangoni International Conference on Computational Methods in Systems Biology, 93-107, 2006	7	2006
Lipid Traffic Analysis reveals the impact of high paternal carbohydrate intake on offsprings’ lipid metabolism S Furse, AJ Watkins, N Hojat, J Smith, HEL Williams, D Chiarugi, ... Communications biology 4 (1), 1-12, 2021	6	2021
A taxonomy of causality-based biological properties C Bodei, A Bracciali, D Chiarugi, R Gori Electronic Notes in Theoretical Computer Science, 19, 116-133, 2010	6	2010

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