Armin Töpfer
Armin Töpfer
Department of Biosystems Science and Engineering, ETH Zurich
Verified email at bsse.ethz.ch
TitleCited byYear
Probabilistic inference of viral quasispecies subject to recombination
A Töpfer, O Zagordi, S Prabhakaran, V Roth, E Halperin, N Beerenwinkel
Journal of Computational Biology 20 (2), 113-123, 2013
115*2013
Full-length haplotype reconstruction to infer the structure of heterogeneous virus populations
FD Giallonardo, A Töpfer, M Rey, S Prabhakaran, Y Duport, C Leemann, ...
Nucleic acids research 42 (14), e115-e115, 2014
892014
Viral quasispecies assembly via maximal clique enumeration
A Töpfer, T Marschall, RA Bull, F Luciani, A Schönhuth, N Beerenwinkel
PLoS computational biology 10 (3), 2014
722014
Research in computational molecular biology
J Huang, Q Morris, B Frey
Detecting microRNA targets by linking sequence, microRNA and gene expression …, 2006
652006
Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome
AM Wenger, P Peluso, WJ Rowell, PC Chang, RJ Hall, GT Concepcion, ...
Nature biotechnology 37 (10), 1155-1162, 2019
542019
Sequencing approach to analyze the role of quasispecies for classical swine fever
A Töpfer, D Höper, S Blome, M Beer, N Beerenwinkel, N Ruggli, I Leifer
Virology 438 (1), 14-19, 2013
392013
A method for near full-length amplification and sequencing for six hepatitis C virus genotypes
RA Bull, AA Eltahla, C Rodrigo, SM Koekkoek, M Walker, MR Pirozyan, ...
BMC genomics 17 (1), 247, 2016
362016
BioXSD: the common data-exchange format for everyday bioinformatics web services
M Kalaš, P Puntervoll, A Joseph, E Bartaševičiūtė, A Töpfer, ...
Bioinformatics 26 (18), i540-i546, 2010
322010
Challenges in RNA virus bioinformatics
M Marz, N Beerenwinkel, C Drosten, M Fricke, D Frishman, IL Hofacker, ...
Bioinformatics 30 (13), 1793-1799, 2014
282014
A comprehensive analysis of primer IDs to study heterogeneous HIV-1 populations
D Seifert, F Di Giallonardo, A Töpfer, J Singer, S Schmutz, HF Günthard, ...
Journal of molecular biology 428 (1), 238-250, 2016
192016
Single-molecule sequencing reveals complex genome variation of hepatitis B virus during 15 years of chronic infection following liver transplantation
BD Betz-Stablein, A Töpfer, M Littlejohn, L Yuen, D Colledge, V Sozzi, ...
Journal of virology 90 (16), 7171-7183, 2016
182016
Highly-accurate long-read sequencing improves variant detection and assembly of a human genome
AM Wenger, P Peluso, WJ Rowell, PC Chang, RJ Hall, GT Concepcion, ...
BioRxiv, 519025, 2019
142019
Highly-accurate long-read sequencing improves variant detection and assembly of a human genome. bioRxiv, 519025
AM Wenger, P Peluso, WJ Rowell, PC Chang, RJ Hall, GT Concepcion, ...
Figure Legends Figure 1, 2019
62019
Highly-accurate long-read sequencing improves variant detection and assembly of a human genome. bioRxiv
AM Wenger, P Peluso, WJ Rowell, PC Chang, RJ Hall, GT Concepcion, ...
Preprint]. doi 10, 519025, 2019
52019
Highly-accurate long-read sequencing improves variant detection and assembly of a human genome: Supplementary Material
AM Wenger, P Peluso, WJ Rowell, P Chang, RJ Hall, GT Concepcion, ...
BioRxiv, 2019
12019
High-throughput SMRT Sequencing of Clinically Relevant Targets
S Ranade, L Aro, M Seetin, M Weiand, PWL Tai, G Gao, R Hall
EUROPEAN JOURNAL OF HUMAN GENETICS 27, 515-516, 2019
2019
Probabilistic Viral Quasispecies Assembly
A Töpfer, N Beerenwinkel
Computational Methods for Next Generation Sequencing Data Analysis, 355-381, 2016
2016
Viral quasispecies assembly from paired-end reads
A Töpfer, N Beerenwinkel
2014 IEEE 4th International Conference on Computational Advances in Bio and …, 2014
2014
Studies in Viral Quasispecies Reconstruction
A Töpfer
ETH Zurich, 2014
2014
Visualization of viral populations
A Töpfer, V Boskova, M Däumer, A Thielen, D Seifert, N Beerenwinkel
F1000Research 4, 2013
2013
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Articles 1–20