| Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome AM Wenger, P Peluso, WJ Rowell, PC Chang, RJ Hall, GT Concepcion, ... Nature biotechnology 37 (10), 1155-1162, 2019 | 584 | 2019 |
| Probabilistic inference of viral quasispecies subject to recombination A Töpfer, O Zagordi, S Prabhakaran, V Roth, E Halperin, N Beerenwinkel Journal of Computational Biology 20 (2), 113-123, 2013 | 148* | 2013 |
| Full-length haplotype reconstruction to infer the structure of heterogeneous virus populations FD Giallonardo, A Töpfer, M Rey, S Prabhakaran, Y Duport, C Leemann, ... Nucleic acids research 42 (14), e115-e115, 2014 | 122 | 2014 |
| Viral quasispecies assembly via maximal clique enumeration A Töpfer, T Marschall, RA Bull, F Luciani, A Schönhuth, N Beerenwinkel PLoS computational biology 10 (3), e1003515, 2014 | 101 | 2014 |
| Challenges in RNA virus bioinformatics M Marz, N Beerenwinkel, C Drosten, M Fricke, D Frishman, IL Hofacker, ... Bioinformatics 30 (13), 1793-1799, 2014 | 58 | 2014 |
| A method for near full-length amplification and sequencing for six hepatitis C virus genotypes RA Bull, AA Eltahla, C Rodrigo, SM Koekkoek, M Walker, MR Pirozyan, ... BMC genomics 17 (1), 1-10, 2016 | 54 | 2016 |
| Sequencing approach to analyze the role of quasispecies for classical swine fever A Töpfer, D Höper, S Blome, M Beer, N Beerenwinkel, N Ruggli, I Leifer Virology 438 (1), 14-19, 2013 | 46 | 2013 |
| Single-molecule sequencing reveals complex genome variation of hepatitis B virus during 15 years of chronic infection following liver transplantation BD Betz-Stablein, A Töpfer, M Littlejohn, L Yuen, D Colledge, V Sozzi, ... Journal of virology 90 (16), 7171-7183, 2016 | 33 | 2016 |
| BioXSD: the common data-exchange format for everyday bioinformatics web services M Kalaš, P Puntervoll, A Joseph, E Bartaševičiūtė, A Töpfer, ... Bioinformatics 26 (18), i540-i546, 2010 | 33 | 2010 |
| A comprehensive analysis of primer IDs to study heterogeneous HIV-1 populations D Seifert, F Di Giallonardo, A Töpfer, J Singer, S Schmutz, HF Günthard, ... Journal of molecular biology 428 (1), 238-250, 2016 | 30 | 2016 |
| Highly-accurate long-read sequencing improves variant detection and assembly of a human genome. bioRxiv 519025 AM Wenger, P Peluso, WJ Rowell, PC Chang, RJ Hall, GT Concepcion, ... Figure Legends Figure 1, 2019 | 8 | 2019 |
| Probabilistic viral quasispecies assembly A Töpfer, N Beerenwinkel Computational Methods for Next Generation Sequencing Data Analysis, 355-381, 2016 | 1 | 2016 |
| Comprehensive Single-Nucleotide, Indel, Structural, and Copy-Number Variant Detection in Human Genomes with PacBio HiFi Reads W Rowell, A Wenger, L Hickey, A Toepfer JOURNAL OF MOLECULAR DIAGNOSTICS 22 (11), S51-S51, 2020 | | 2020 |
| High-throughput SMRT Sequencing of Clinically Relevant Targets S Ranade, L Aro, M Seetin, M Weiand, PWL Tai, G Gao, R Hall EUROPEAN JOURNAL OF HUMAN GENETICS 27, 515-516, 2019 | | 2019 |
| Viral quasispecies assembly from paired-end reads A Töpfer, N Beerenwinkel 2014 IEEE 4th International Conference on Computational Advances in Bio and …, 2014 | | 2014 |
| Studies in Viral Quasispecies Reconstruction A Töpfer ETH Zurich, 2014 | | 2014 |
| Visualization of viral populations A Töpfer, V Boskova, M Däumer, A Thielen, D Seifert, N Beerenwinkel F1000Research 4, 2013 | | 2013 |
| Full-length HIV-1 Haplotype Reconstruction from Heterogeneous Virus Populations A Töpfer, F Di Giallonardo, M Rey, S Prabhakaran, Y Duport, C Leemann, ... Journal of Computational Biology, 2013 | | 2013 |
| QuasiRecomb: prediction of recombinant viral quasispecies A Töpfer, N Beerenwinkel F1000Research 3, 2012 | | 2012 |
| Library Prep and Bioinformatics Improvements for Full-Length Transcript Sequencing on the PacBio Sequel System M Vierra, B Galvin, T Hon, H Ferrao, A Töpfer, Y Li, E Tseng Plant and Animal Genome XXVII Conference (January 12-16, 2019), 0 | | |
Niko BeerenwinkelProfessor of Computational Biology, ETH ZurichVerified email at bsse.ethz.ch
