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Oscar Dias
Oscar Dias
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Titel
Zitiert von
Zitiert von
Jahr
Reconstructing genome-scale metabolic models with merlin
O Dias, M Rocha, EC Ferreira, I Rocha
Nucleic acids research 43 (8), 3899-3910, 2015
1702015
Staphylococci phages display vast genomic diversity and evolutionary relationships
H Oliveira, M Sampaio, LDR Melo, O Dias, WH Pope, GF Hatfull, ...
BMC genomics 20 (1), 357, 2019
652019
Correlation between sludge settling ability and image analysis information using partial least squares
DP Mesquita, O Dias, AMA Dias, AL Amaral, EC Ferreira
Analytica chimica acta 642 (1-2), 94-101, 2009
652009
Monitoring of activated sludge settling ability through image analysis: validation on full-scale wastewater treatment plants
DP Mesquita, O Dias, AL Amaral, EC Ferreira
Bioprocess and biosystems engineering 32 (3), 361-367, 2009
612009
iOD907, the first genome‐scale metabolic model for the milk yeast Kluyveromyces lactis
O Dias, R Pereira, AK Gombert, EC Ferreira, I Rocha
Biotechnology Journal 9 (6), 776-790, 2014
532014
Predicting promoters in phage genomes using PhagePromoter
M Sampaio, M Rocha, H Oliveira, O Dias
Bioinformatics 35 (24), 5301-5302, 2019
302019
A comparison between bright field and phase-contrast image analysis techniques in activated sludge morphological characterization
DP Mesquita, O Dias, AL Amaral, EC Ferreira
Microscopy and microanalysis 16 (2), 166-174, 2010
302010
Systems biology in fungi
O Dias, I Rocha
Molecular Biology of Food and Water Borne Mycotoxigenic and Mycotic Fungi, 69-92, 2015
252015
Merlin: Metabolic models reconstruction using genome-scale information
O Dias, M Rocha, EC Ferreira, I Rocha
IFAC Proceedings Volumes 43 (6), 120-125, 2010
252010
merlin, an improved framework for the reconstruction of high-quality genome-scale metabolic models
J Capela, D Lagoa, R Rodrigues, E Cunha, F Cruz, A Barbosa, J Bastos, ...
Nucleic Acids Research 50 (11), 6052-6066, 2022
23*2022
Genome-Scale Metabolic Model of the Human Pathogen Candida albicans: A Promising Platform for Drug Target Prediction
R Viana, O Dias, D Lagoa, M Galocha, I Rocha, MC Teixeira
Journal of Fungi 6 (3), 171, 2020
222020
A tailspike with exopolysaccharide depolymerase activity from a new Providencia stuartii phage makes multidrug-resistant bacteria susceptible to serum-mediated killing
H Oliveira, G Pinto, B Mendes, O Dias, H Hendrix, E Akturk, JP Noben, ...
Applied and Environmental Microbiology 86 (13), e00073-20, 2020
222020
iDS372, a phenotypically reconciled model for the metabolism of Streptococcus pneumoniae strain R6
O Dias, J Saraiva, C Faria, M Ramirez, F Pinto, I Rocha
Frontiers in microbiology 10, 1283, 2019
222019
Genome-wide metabolic re-annotation of Ashbya gossypii: new insights into its metabolism through a comparative analysis with Saccharomyces cerevisiae and Kluyveromyces lactis
D Gomes, TQ Aguiar, O Dias, EC Ferreira, L Domingues, I Rocha
BMC genomics 15 (1), 810, 2014
212014
Genome-wide metabolic (re-) annotation of Kluyveromyces lactis
O Dias, AK Gombert, EC Ferreira, I Rocha
BMC genomics 13 (1), 517, 2012
212012
Insights into the genome architecture and evolution of Shiga toxin encoding bacteriophages of Escherichia coli
G Pinto, M Sampaio, O Dias, C Almeida, J Azeredo, H Oliveira
BMC genomics 22 (1), 366, 2021
202021
Genome-wide semi-automated annotation of transporter systems
O Dias, D Gomes, P Vilaça, J Cardoso, M Rocha, EC Ferreira, I Rocha
IEEE/ACM transactions on computational biology and bioinformatics 14 (2 …, 2016
202016
Reconstructing high-quality large-scale metabolic models with merlin
O Dias, M Rocha, EC Ferreira, I Rocha
Metabolic Network Reconstruction and Modeling: Methods and Protocols, 1-36, 2018
192018
A review of methods for the reconstruction and analysis of integrated genome-scale models of metabolism and regulation
F Cruz, JP Faria, M Rocha, I Rocha, O Dias
Biochemical Society Transactions 48 (5), 1889-1903, 2020
172020
A kinetic model of the central carbon metabolism for acrylic acid production in Escherichia coli
A Oliveira, J Rodrigues, EC Ferreira, L Rodrigues, O Dias
PLOS Computational Biology 17 (3), e1008704, 2021
152021
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