Hannes Braberg
Hannes Braberg
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A SARS-CoV-2 protein interaction map reveals targets for drug repurposing
DE Gordon, GM Jang, M Bouhaddou, J Xu, K Obernier, KM White, ...
Nature 583 (7816), 459-468, 2020
MODBASE: a database of annotated comparative protein structure models and associated resources
U Pieper, N Eswar, FP Davis, H Braberg, MS Madhusudhan, A Rossi, ...
Nucleic acids research 34 (suppl_1), D291-D295, 2006
Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms
DE Gordon, J Hiatt, M Bouhaddou, VV Rezelj, S Ulferts, H Braberg, ...
Science 370 (6521), eabe9403, 2020
Functional organization of the S. cerevisiae phosphorylation network
D Fiedler, H Braberg, M Mehta, G Chechik, G Cagney, P Mukherjee, ...
Cell 136 (5), 952-963, 2009
MODBASE, a database of annotated comparative protein structure models, and associated resources
U Pieper, N Eswar, H Braberg, MS Madhusudhan, FP Davis, AC Stuart, ...
Nucleic acids research 32 (suppl_1), D217-D222, 2004
A genetic interaction map of RNA-processing factors reveals links between Sem1/Dss1-containing complexes and mRNA export and splicing
GM Wilmes, M Bergkessel, S Bandyopadhyay, M Shales, H Braberg, ...
Molecular cell 32 (5), 735-746, 2008
High-throughput, quantitative analyses of genetic interactions in E. coli
A Typas, RJ Nichols, DA Siegele, M Shales, SR Collins, B Lim, H Braberg, ...
Nature methods 5 (9), 781-787, 2008
Evolution of enhanced innate immune evasion by SARS-CoV-2
LG Thorne, M Bouhaddou, AK Reuschl, L Zuliani-Alvarez, B Polacco, ...
Nature 602 (7897), 487-495, 2022
From structure to systems: high-resolution, quantitative genetic analysis of RNA polymerase II
H Braberg, H Jin, EA Moehle, YA Chan, S Wang, M Shales, JJ Benschop, ...
Cell 154 (4), 775-788, 2013
A lipid E-MAP identifies Ubx2 as a critical regulator of lipid saturation and lipid bilayer stress
MA Surma, C Klose, D Peng, M Shales, C Mrejen, A Stefanko, H Braberg, ...
Molecular cell 51 (4), 519-530, 2013
A plasma-membrane E-MAP reveals links of the eisosome with sphingolipid metabolism and endosomal trafficking
PS Aguilar, F Fröhlich, M Rehman, M Shales, I Ulitsky, A Olivera-Couto, ...
Nature structural & molecular biology 17 (7), 901-908, 2010
SALIGN: a web server for alignment of multiple protein sequences and structures
H Braberg, BM Webb, E Tjioe, U Pieper, A Sali, MS Madhusudhan
Bioinformatics 28 (15), 2072-2073, 2012
Evolution of enhanced innate immune evasion by the SARS-CoV-2 B. 1.1. 7 UK variant
LG Thorne, M Bouhaddou, AK Reuschl, L Zuliani-Alvarez, B Polacco, ...
BioRxiv, 2021
RNA polymerase II carboxyl-terminal domain phosphorylation regulates protein stability of the Set2 methyltransferase and histone H3 di-and trimethylation at lysine 36
SM Fuchs, KO Kizer, H Braberg, NJ Krogan, BD Strahl
Journal of Biological Chemistry 287 (5), 3249-3256, 2012
Protein complex compositions predicted by structural similarity
FP Davis, H Braberg, MY Shen, U Pieper, A Sali, MS Madhusudhan
Nucleic acids research 34 (10), 2943-2952, 2006
Adventures in time and space: splicing efficiency and RNA polymerase II elongation rate
EA Moehle, H Braberg, NJ Krogan, C Guthrie
RNA biology 11 (4), 313-319, 2014
Systematic triple-mutant analysis uncovers functional connectivity between pathways involved in chromosome regulation
JE Haber, H Braberg, Q Wu, R Alexander, J Haase, C Ryan, ...
Cell reports 3 (6), 2168-2178, 2013
Individual lysine acetylations on the N terminus of Saccharomyces cerevisiae H2A. Z are highly but not differentially regulated
M Mehta, H Braberg, S Wang, A Lozsa, M Shales, A Solache, NJ Krogan, ...
Journal of biological chemistry 285 (51), 39855-39865, 2010
Quantitative analysis of triple-mutant genetic interactions
H Braberg, R Alexander, M Shales, J Xu, KE Franks-Skiba, Q Wu, ...
Nature protocols 9 (8), 1867-1881, 2014
Genetic interaction mapping informs integrative structure determination of protein complexes
H Braberg, I Echeverria, S Bohn, P Cimermancic, A Shiver, R Alexander, ...
Science 370 (6522), eaaz4910, 2020
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