A SARS-CoV-2 protein interaction map reveals targets for drug repurposing DE Gordon, GM Jang, M Bouhaddou, J Xu, K Obernier, KM White, ... Nature 583 (7816), 459-468, 2020 | 4136 | 2020 |
MODBASE: a database of annotated comparative protein structure models and associated resources U Pieper, N Eswar, FP Davis, H Braberg, MS Madhusudhan, A Rossi, ... Nucleic acids research 34 (suppl_1), D291-D295, 2006 | 664* | 2006 |
Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms DE Gordon, J Hiatt, M Bouhaddou, VV Rezelj, S Ulferts, H Braberg, ... Science 370 (6521), eabe9403, 2020 | 555 | 2020 |
Functional organization of the S. cerevisiae phosphorylation network D Fiedler, H Braberg, M Mehta, G Chechik, G Cagney, P Mukherjee, ... Cell 136 (5), 952-963, 2009 | 308 | 2009 |
MODBASE, a database of annotated comparative protein structure models, and associated resources U Pieper, N Eswar, H Braberg, MS Madhusudhan, FP Davis, AC Stuart, ... Nucleic acids research 32 (suppl_1), D217-D222, 2004 | 308 | 2004 |
A genetic interaction map of RNA-processing factors reveals links between Sem1/Dss1-containing complexes and mRNA export and splicing GM Wilmes, M Bergkessel, S Bandyopadhyay, M Shales, H Braberg, ... Molecular cell 32 (5), 735-746, 2008 | 290 | 2008 |
High-throughput, quantitative analyses of genetic interactions in E. coli A Typas, RJ Nichols, DA Siegele, M Shales, SR Collins, B Lim, H Braberg, ... Nature methods 5 (9), 781-787, 2008 | 279 | 2008 |
Evolution of enhanced innate immune evasion by SARS-CoV-2 LG Thorne, M Bouhaddou, AK Reuschl, L Zuliani-Alvarez, B Polacco, ... Nature 602 (7897), 487-495, 2022 | 221 | 2022 |
From structure to systems: high-resolution, quantitative genetic analysis of RNA polymerase II H Braberg, H Jin, EA Moehle, YA Chan, S Wang, M Shales, JJ Benschop, ... Cell 154 (4), 775-788, 2013 | 153 | 2013 |
A lipid E-MAP identifies Ubx2 as a critical regulator of lipid saturation and lipid bilayer stress MA Surma, C Klose, D Peng, M Shales, C Mrejen, A Stefanko, H Braberg, ... Molecular cell 51 (4), 519-530, 2013 | 143 | 2013 |
A plasma-membrane E-MAP reveals links of the eisosome with sphingolipid metabolism and endosomal trafficking PS Aguilar, F Fröhlich, M Rehman, M Shales, I Ulitsky, A Olivera-Couto, ... Nature structural & molecular biology 17 (7), 901-908, 2010 | 118 | 2010 |
SALIGN: a web server for alignment of multiple protein sequences and structures H Braberg, BM Webb, E Tjioe, U Pieper, A Sali, MS Madhusudhan Bioinformatics 28 (15), 2072-2073, 2012 | 94 | 2012 |
Evolution of enhanced innate immune evasion by the SARS-CoV-2 B. 1.1. 7 UK variant LG Thorne, M Bouhaddou, AK Reuschl, L Zuliani-Alvarez, B Polacco, ... BioRxiv, 2021 | 90 | 2021 |
RNA polymerase II carboxyl-terminal domain phosphorylation regulates protein stability of the Set2 methyltransferase and histone H3 di-and trimethylation at lysine 36 SM Fuchs, KO Kizer, H Braberg, NJ Krogan, BD Strahl Journal of Biological Chemistry 287 (5), 3249-3256, 2012 | 77 | 2012 |
Protein complex compositions predicted by structural similarity FP Davis, H Braberg, MY Shen, U Pieper, A Sali, MS Madhusudhan Nucleic acids research 34 (10), 2943-2952, 2006 | 75 | 2006 |
Adventures in time and space: splicing efficiency and RNA polymerase II elongation rate EA Moehle, H Braberg, NJ Krogan, C Guthrie RNA biology 11 (4), 313-319, 2014 | 52 | 2014 |
Systematic triple-mutant analysis uncovers functional connectivity between pathways involved in chromosome regulation JE Haber, H Braberg, Q Wu, R Alexander, J Haase, C Ryan, ... Cell reports 3 (6), 2168-2178, 2013 | 49 | 2013 |
Individual lysine acetylations on the N terminus of Saccharomyces cerevisiae H2A. Z are highly but not differentially regulated M Mehta, H Braberg, S Wang, A Lozsa, M Shales, A Solache, NJ Krogan, ... Journal of Biological Chemistry 285 (51), 39855-39865, 2010 | 34 | 2010 |
Genetic interaction mapping informs integrative structure determination of protein complexes H Braberg, I Echeverria, S Bohn, P Cimermancic, A Shiver, R Alexander, ... Science 370 (6522), eaaz4910, 2020 | 24 | 2020 |
Nonsense-mediated decay regulates key components of homologous recombination R Janke, J Kong, H Braberg, G Cantin, JR Yates III, NJ Krogan, WD Heyer Nucleic acids research 44 (11), 5218-5230, 2016 | 23 | 2016 |