| Protter: interactive protein feature visualization and integration with experimental proteomic data U Omasits, CH Ahrens, S Müller, B Wollscheid Bioinformatics, btt607, 2013 | 899 | 2013 |
| Explosive cell lysis as a mechanism for the biogenesis of bacterial membrane vesicles and biofilms L Turnbull, M Toyofuku, AL Hynen, M Kurosawa, G Pessi, NK Petty, ... Nature Communications 7, 2016 | 373 | 2016 |
| The expansion of the metazoan microRNA repertoire J Hertel, M Lindemeyer, K Missal, C Fried, A Tanzer, C Flamm, ... BMC genomics 7 (1), 25, 2006 | 360 | 2006 |
| A mass spectrometric-derived cell surface protein atlas D Bausch-Fluck, A Hofmann, T Bock, AP Frei, F Cerciello, A Jacobs, ... PloS one 10 (4), e0121314, 2015 | 259 | 2015 |
| A Peptidomimetic Antibiotic Targets Outer Membrane Proteins and Disrupts Selectively the Outer Membrane in Escherichia coli M Urfer, J Bogdanovic, FL Monte, K Moehle, K Zerbe, U Omasits, ... Journal of Biological Chemistry 291 (4), 1921-1932, 2016 | 79 | 2016 |
| The AHL-and BDSF-Dependent Quorum Sensing Systems Control Specific and Overlapping Sets of Genes in Burkholderia cenocepacia H111 N Schmid, G Pessi, Y Deng, C Aguilar, AL Carlier, A Grunau, U Omasits, ... PLOS ONE 7 (11), e49966, 2012 | 75 | 2012 |
| Combine and Conquer: Surfactants, solvents, and chaotropes for robust mass spectrometry based analyses of membrane proteins M Waas, S Bhattacharya, S Chuppa, X Wu, DR Jensen, U Omasits, ... Analytical chemistry 86 (3), 1551-1559, 2014 | 63 | 2014 |
| Directed shotgun proteomics guided by saturated RNA-seq identifies a complete expressed prokaryotic proteome U Omasits, M Quebatte, DJ Stekhoven, C Fortes, B Roschitzki, ... Genome research 23 (11), 1916-1927, 2013 | 59 | 2013 |
| The Hemolymph Proteome of Fed and Starved Drosophila Larvae B Handke, I Poernbacher, S Goetze, CH Ahrens, U Omasits, F Marty, ... PLOS ONE 8 (6), e67208, 2013 | 54 | 2013 |
| Genome-wide transcription start site mapping of Bradyrhizobium japonicum grown free-living or in symbiosis–a rich resource to identify new transcripts, proteins and to study … J Čuklina, J Hahn, M Imakaev, U Omasits, KU Förstner, N Ljubimov, ... BMC genomics 17 (1), 302, 2016 | 53 | 2016 |
| 3-Layer-based analysis of peptide–MHC interaction: In silico prediction, peptide binding affinity and T cell activation in a relevant allergen-specific model B Knapp, U Omasits, B Bohle, B Maillere, C Ebner, W Schreiner, ... Molecular Immunology 46 (8), 1839-1844, 2009 | 48 | 2009 |
| Response of Burkholderia cenocepacia H111 to Micro-Oxia G Pessi, R Braunwalder, A Grunau, U Omasits, CH Ahrens, L Eberl PLOS ONE 8 (9), e72939, 2013 | 44 | 2013 |
| Analysis of key parameters for molecular dynamics of pMHC molecules U Omasits, B Knapp, M Neumann, O Steinhauser, H Stockinger, R Kobler, ... Molecular Simulation 34 (8), 781-793, 2008 | 44 | 2008 |
| vmdICE: A plug‐in for rapid evaluation of molecular dynamics simulations using VMD B Knapp, N Lederer, U Omasits, W Schreiner Journal of Computational Chemistry 31 (16), 2868-2873, 2010 | 40 | 2010 |
| The SIB Swiss Institute of Bioinformatics" resources: focus on curated databases LA Bultet, J Aguilar-Rodriguez, CH Ahrens, EL Ahrne, N Ai, L Aimo, ... Nucleic Acids Research 44 (EPFL-ARTICLE-217833), D27-D37, 2016 | 39 | 2016 |
| σ54-Dependent Response to Nitrogen Limitation and Virulence in Burkholderia cenocepacia Strain H111 M Lardi, C Aguilar, A Pedrioli, U Omasits, A Suppiger, G Cárcamo-Oyarce, ... Applied and environmental microbiology 81 (12), 4077-4089, 2015 | 38 | 2015 |
| A comparative approach linking molecular dynamics of altered peptide ligands and MHC with in vivo immune responses B Knapp, U Omasits, W Schreiner, MM Epstein PloS one 5 (7), e11653, 2010 | 38 | 2010 |
| A critical cross-validation of high throughput structural binding prediction methods for pMHC B Knapp, U Omasits, S Frantal, W Schreiner Journal of computer-aided molecular design 23 (5), 301-307, 2009 | 36 | 2009 |
| Improved prediction of peptide detectability for targeted proteomics using a rank-based algorithm and organism-specific data E Qeli, U Omasits, S Goetze, DJ Stekhoven, JE Frey, K Basler, ... Journal of Proteomics, 2014 | 29 | 2014 |
| Proteome-wide identification of predominant subcellular protein localizations in a bacterial model organism DJ Stekhoven, U Omasits, M Quebatte, C Dehio, CH Ahrens Journal of proteomics 99, 123-137, 2014 | 29 | 2014 |
