Ulrich Goldmann (Omasits)
Ulrich Goldmann (Omasits)
Data Scientist at the Research Center for Molecular Medicine, Vienna, Austria
Verified email at - Homepage
Cited by
Cited by
Protter: interactive protein feature visualization and integration with experimental proteomic data
U Omasits, CH Ahrens, S Müller, B Wollscheid
Bioinformatics, btt607, 2013
Explosive cell lysis as a mechanism for the biogenesis of bacterial membrane vesicles and biofilms
L Turnbull, M Toyofuku, AL Hynen, M Kurosawa, G Pessi, NK Petty, ...
Nature Communications 7, 2016
The expansion of the metazoan microRNA repertoire
J Hertel, M Lindemeyer, K Missal, C Fried, A Tanzer, C Flamm, ...
BMC genomics 7 (1), 25, 2006
A mass spectrometric-derived cell surface protein atlas
D Bausch-Fluck, A Hofmann, T Bock, AP Frei, F Cerciello, A Jacobs, ...
PloS one 10 (4), e0121314, 2015
A Peptidomimetic Antibiotic Targets Outer Membrane Proteins and Disrupts Selectively the Outer Membrane in Escherichia coli
M Urfer, J Bogdanovic, FL Monte, K Moehle, K Zerbe, U Omasits, ...
Journal of Biological Chemistry 291 (4), 1921-1932, 2016
The AHL-and BDSF-Dependent Quorum Sensing Systems Control Specific and Overlapping Sets of Genes in Burkholderia cenocepacia H111
N Schmid, G Pessi, Y Deng, C Aguilar, AL Carlier, A Grunau, U Omasits, ...
PLOS ONE 7 (11), e49966, 2012
Combine and Conquer: Surfactants, solvents, and chaotropes for robust mass spectrometry based analyses of membrane proteins
M Waas, S Bhattacharya, S Chuppa, X Wu, DR Jensen, U Omasits, ...
Analytical chemistry 86 (3), 1551-1559, 2014
Directed shotgun proteomics guided by saturated RNA-seq identifies a complete expressed prokaryotic proteome
U Omasits, M Quebatte, DJ Stekhoven, C Fortes, B Roschitzki, ...
Genome research 23 (11), 1916-1927, 2013
The Hemolymph Proteome of Fed and Starved Drosophila Larvae
B Handke, I Poernbacher, S Goetze, CH Ahrens, U Omasits, F Marty, ...
PLOS ONE 8 (6), e67208, 2013
Genome-wide transcription start site mapping of Bradyrhizobium japonicum grown free-living or in symbiosis–a rich resource to identify new transcripts, proteins and to study …
J Čuklina, J Hahn, M Imakaev, U Omasits, KU Förstner, N Ljubimov, ...
BMC genomics 17 (1), 302, 2016
3-Layer-based analysis of peptide–MHC interaction: In silico prediction, peptide binding affinity and T cell activation in a relevant allergen-specific model
B Knapp, U Omasits, B Bohle, B Maillere, C Ebner, W Schreiner, ...
Molecular Immunology 46 (8), 1839-1844, 2009
Response of Burkholderia cenocepacia H111 to Micro-Oxia
G Pessi, R Braunwalder, A Grunau, U Omasits, CH Ahrens, L Eberl
PLOS ONE 8 (9), e72939, 2013
Analysis of key parameters for molecular dynamics of pMHC molecules
U Omasits, B Knapp, M Neumann, O Steinhauser, H Stockinger, R Kobler, ...
Molecular Simulation 34 (8), 781-793, 2008
vmdICE: A plug‐in for rapid evaluation of molecular dynamics simulations using VMD
B Knapp, N Lederer, U Omasits, W Schreiner
Journal of Computational Chemistry 31 (16), 2868-2873, 2010
The SIB Swiss Institute of Bioinformatics" resources: focus on curated databases
LA Bultet, J Aguilar-Rodriguez, CH Ahrens, EL Ahrne, N Ai, L Aimo, ...
Nucleic Acids Research 44 (EPFL-ARTICLE-217833), D27-D37, 2016
σ54-Dependent Response to Nitrogen Limitation and Virulence in Burkholderia cenocepacia Strain H111
M Lardi, C Aguilar, A Pedrioli, U Omasits, A Suppiger, G Cárcamo-Oyarce, ...
Applied and environmental microbiology 81 (12), 4077-4089, 2015
A comparative approach linking molecular dynamics of altered peptide ligands and MHC with in vivo immune responses
B Knapp, U Omasits, W Schreiner, MM Epstein
PloS one 5 (7), e11653, 2010
A critical cross-validation of high throughput structural binding prediction methods for pMHC
B Knapp, U Omasits, S Frantal, W Schreiner
Journal of computer-aided molecular design 23 (5), 301-307, 2009
Improved prediction of peptide detectability for targeted proteomics using a rank-based algorithm and organism-specific data
E Qeli, U Omasits, S Goetze, DJ Stekhoven, JE Frey, K Basler, ...
Journal of Proteomics, 2014
Proteome-wide identification of predominant subcellular protein localizations in a bacterial model organism
DJ Stekhoven, U Omasits, M Quebatte, C Dehio, CH Ahrens
Journal of proteomics 99, 123-137, 2014
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