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Isabell Bludau
Isabell Bludau
MPI of Biochemistry
Verified email at biochem.mpg.de
Title
Cited by
Cited by
Year
diaPASEF: parallel accumulation–serial fragmentation combined with data-independent acquisition
F Meier, AD Brunner, M Frank, A Ha, I Bludau, E Voytik, ...
Nature methods 17 (12), 1229-1236, 2020
4082020
Multi-omic measurements of heterogeneity in HeLa cells across laboratories
Y Liu, Y Mi, T Mueller, S Kreibich, EG Williams, A Van Drogen, C Borel, ...
Nature biotechnology 37 (3), 314-322, 2019
2932019
Statistical control of peptide and protein error rates in large-scale targeted data-independent acquisition analyses
G Rosenberger, I Bludau, U Schmitt, M Heusel, CL Hunter, Y Liu, ...
Nature methods 14 (9), 921-927, 2017
2072017
Proteomic and interactomic insights into the molecular basis of cell functional diversity
I Bludau, R Aebersold
Nature Reviews Molecular Cell Biology 21 (6), 327-340, 2020
1922020
Complex‐centric proteome profiling by SEC‐SWATH‐MS
M Heusel, I Bludau, G Rosenberger, R Hafen, M Frank, ...
Molecular systems biology 15 (1), e8438, 2019
1352019
Data-independent acquisition method for ubiquitinome analysis reveals regulation of circadian biology
FM Hansen, MC Tanzer, F Brüning, I Bludau, C Stafford, BA Schulman, ...
Nature Communications 12 (1), 254, 2021
842021
The structural context of posttranslational modifications at a proteome-wide scale
I Bludau, S Willems, WF Zeng, MT Strauss, FM Hansen, MC Tanzer, ...
PLoS biology 20 (5), e3001636, 2022
692022
A global screen for assembly state changes of the mitotic proteome by SEC-SWATH-MS
M Heusel, M Frank, M Köhler, S Amon, F Frommelt, G Rosenberger, ...
Cell systems 10 (2), 133-155. e6, 2020
652020
AlphaPeptDeep: a modular deep learning framework to predict peptide properties for proteomics
WF Zeng, XX Zhou, S Willems, C Ammar, M Wahle, I Bludau, E Voytik, ...
Nature Communications 13 (1), 7238, 2022
602022
Systematic detection of functional proteoform groups from bottom-up proteomic datasets
I Bludau, M Frank, C Dörig, Y Cai, M Heusel, G Rosenberger, P Picotti, ...
Nature communications 12 (1), 3810, 2021
542021
Complex-centric proteome profiling by SEC-SWATH-MS for the parallel detection of hundreds of protein complexes
I Bludau, M Heusel, M Frank, G Rosenberger, R Hafen, ...
Nature protocols, 1-47, 2020
412020
PCprophet: a framework for protein complex prediction and differential analysis using proteomic data
A Fossati, C Li, F Uliana, F Wendt, F Frommelt, P Sykacek, M Heusel, ...
Nature methods 18 (5), 520-527, 2021
362021
ACEseq–allele specific copy number estimation from whole genome sequencing
K Kleinheinz, I Bludau, D Hübschmann, M Heinold, P Kensche, Z Gu, ...
BioRXiv, 210807, 2017
342017
Phosphoproteome profiling uncovers a key role for CDKs in TNF signaling
MC Tanzer, I Bludau, CA Stafford, V Hornung, M Mann
Nature communications 12 (1), 6053, 2021
322021
Parallel accumulation–serial fragmentation combined with data-independent acquisition (diaPASEF): Bottom-up proteomics with near optimal ion usage
F Meier, AD Brunner, M Frank, A Ha, I Bludau, E Voytik, ...
BioRxiv, 656207, 2019
322019
Integrative proteomics reveals principles of dynamic phosphosignaling networks in human erythropoiesis
Ö Karayel, P Xu, I Bludau, S Velan Bhoopalan, Y Yao, FC Ana Rita, ...
Molecular systems biology 16 (12), e9813, 2020
282020
AlphaPept: a modern and open framework for MS-based proteomics
MT Strauss, I Bludau, WF Zeng, E Voytik, C Ammar, JP Schessner, ...
Nature Communications 15 (1), 2168, 2024
262024
Robust dimethyl‐based multiplex‐DIA doubles single‐cell proteome depth via a reference channel
M Thielert, ECM Itang, C Ammar, FA Rosenberger, I Bludau, L Schweizer, ...
Molecular Systems Biology 19 (9), e11503, 2023
24*2023
SECAT: quantifying protein complex dynamics across cell states by network-centric analysis of SEC-SWATH-MS profiles
G Rosenberger, M Heusel, I Bludau, BC Collins, C Martelli, EG Williams, ...
Cell systems 11 (6), 589-607. e8, 2020
242020
Toward an integrated machine learning model of a proteomics experiment
BA Neely, V Dorfer, L Martens, I Bludau, R Bouwmeester, S Degroeve, ...
Journal of proteome research 22 (3), 681-696, 2023
172023
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Articles 1–20