Manuel Ares, Jr.

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David HausslerScientific Director, UC Santa Cruz Genomics Institute, University of California, Santa CruzVerified email at soe.ucsc.edu
John Paul DonohueVerified email at ucsc.edu
Gregory HannonCRUK, Cambridge University, New York Genome Center, Cold Spring Harbor LaboratoryVerified email at cruk.cam.ac.uk
Melissa ClineProject Scientist, UC Santa Cruz Genomics InstituteVerified email at soe.ucsc.edu
Nello CristianiniUniversity of BristolVerified email at bristol.ac.uk
Sol KatzmanUC Santa Cruz Genomics InstituteVerified email at soe.ucsc.edu
Gene Yeo PhD MBAProfessor of Cellular and Molecular Medicine at UC San DiegoVerified email at ucsd.edu
Kenneth J. HoweUniversity of California at Santa Cruz, UC BerkeleyVerified email at brinestonepress.com
Terrence FureyAssoc Professor, Genetics and Biology, UNC-Chapel HillVerified email at unc.edu
Sherif Abou ElelaUniversite de SherbrookeVerified email at usherbrooke.ca
Yael mandel-gutfreundTechnionVerified email at tx.technion.ac.il
Xiang-Dong FuUC, San DiegoVerified email at health.ucsd.edu
Stephanie HuelgaNSF Graduate Research Fellow, University of California, San DiegoVerified email at ucsd.edu
Tiffany Y. LiangDepartment of Cellular and Molecular Medicine, University of California, San Diego, La JollaVerified email at rohan.sdsu.edu
shawn hoonMolecular Engineering LabVerified email at bmsi.a-star.edu.sg
Adam SiepelSimons Center for Quantitative Biology, Cold Spring Harbor LaboratoryVerified email at cshl.edu
Andrew KernEvergreen Associate Professor of Biology, University of OregonVerified email at uoregon.edu
Katherine S PollardDirector, Gladstone Institute of Data Science & Biotechnology / UCSFVerified email at gladstone.ucsf.edu
Jakob Skou PedersenProfessor at Department of Molecular Medicine, Aarhus UniversityVerified email at ki.au.dk
Colette DehayInserm U846Verified email at inserm.fr

Manuel Ares, Jr.

University of California, Santa Cruz

Verified email at ucsc.edu - Homepage

Post-transcriptional Gene Regulation RNA structure and function


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Knowledge-based analysis of microarray gene expression data by using support vector machines MPS Brown, WN Grundy, D Lin, N Cristianini, CW Sugnet, TS Furey, ... Proceedings of the National Academy of Sciences 97 (1), 262-267, 2000	3062	2000
RNA: A laboratory manual. DC Rio, M Ares Jr, GJ Hannon, TW Nilsen RNA: a laboratory manual., 2011	1129*	2011
An RNA gene expressed during cortical development evolved rapidly in humans KS Pollard, SR Salama, N Lambert, MA Lambot, S Coppens, JS Pedersen, ... Nature 443 (7108), 167-172, 2006	995	2006
Context-dependent control of alternative splicing by RNA-binding proteins XD Fu, M Ares Nature Reviews Genetics 15 (10), 689-701, 2014	648	2014
A post-transcriptional regulatory switch in polypyrimidine tract-binding proteins reprograms alternative splicing in developing neurons PL Boutz, P Stoilov, Q Li, CH Lin, G Chawla, K Ostrow, L Shiue, M Ares, ... Genes & development 21 (13), 1636-1652, 2007	518	2007
Ultraconserved elements are associated with homeostatic control of splicing regulators by alternative splicing and nonsense-mediated decay JZ Ni, L Grate, JP Donohue, C Preston, N Nobida, G O’Brien, L Shiue, ... Genes & development 21 (6), 708-718, 2007	506	2007
Genomewide analysis of mRNA processing in yeast using splicing-specific microarrays TA Clark, CW Sugnet, M Ares Science 296 (5569), 907-910, 2002	485	2002
Depletion of U3 small nucleolar RNA inhibits cleavage in the 5′ external transcribed spacer of yeast pre‐ribosomal RNA and impairs formation of 18S ribosomal RNA. JMX Hughes, M Ares Jr The EMBO journal 10 (13), 4231-4239, 1991	407	1991
Integrative genome-wide analysis reveals cooperative regulation of alternative splicing by hnRNP proteins SC Huelga, AQ Vu, JD Arnold, TY Liang, PP Liu, BY Yan, JP Donohue, ... Cell reports 1 (2), 167-178, 2012	379	2012
Genome-wide bioinformatic and molecular analysis of introns in Saccharomyces cerevisiae. M Spingola, L Grate, D Haussler, M Ares Rna 5 (2), 221-234, 1999	370	1999
Aberrant alternative splicing and extracellular matrix gene expression in mouse models of myotonic dystrophy H Du, MS Cline, RJ Osborne, DL Tuttle, TA Clark, JP Donohue, MP Hall, ... Nature structural & molecular biology 17 (2), 187, 2010	314	2010
Transcriptome and genome conservation of alternative splicing events in humans and mice CW Sugnet, WJ Kent, M Ares Jr, D Haussler Biocomputing 2004, 66-77, 2003	280	2003
RBPmap: a web server for mapping binding sites of RNA-binding proteins I Paz, I Kosti, M Ares Jr, M Cline, Y Mandel-Gutfreund Nucleic acids research 42 (W1), W361-W367, 2014	278	2014
The splicing regulator Rbfox1 (A2BP1) controls neuronal excitation in the mammalian brain LT Gehman, P Stoilov, J Maguire, A Damianov, CH Lin, L Shiue, M Ares, ... Nature genetics 43 (7), 706-711, 2011	276	2011
RNase III cleaves eukaryotic preribosomal RNA at a U3 snoRNP-dependent site S Abou Elela, H Igel, M Ares Jr Cell 85 (1), 115-124, 1996	267	1996
Accumulation of unstable promoter-associated transcripts upon loss of the nuclear exosome subunit Rrp6p in Saccharomycescerevisiae CA Davis, M Ares Proceedings of the National Academy of Sciences 103 (9), 3262-3267, 2006	264	2006
Muscleblind-like 2-mediated alternative splicing in the developing brain and dysregulation in myotonic dystrophy K Charizanis, KY Lee, R Batra, M Goodwin, C Zhang, Y Yuan, L Shiue, ... Neuron 75 (3), 437-450, 2012	263	2012
Genome-wide analysis reveals SR protein cooperation and competition in regulated splicing S Pandit, Y Zhou, L Shiue, G Coutinho-Mansfield, H Li, J Qiu, J Huang, ... Molecular cell 50 (2), 223-235, 2013	255	2013
Unusual intron conservation near tissue-regulated exons found by splicing microarrays CW Sugnet, K Srinivasan, TA Clark, G O'Brien, MS Cline, H Wang, ... PLoS Comput Biol 2 (1), e4, 2006	234	2006
A handful of intron-containing genes produces the lion's share of yeast mRNA M ARES, L GRATE, MH PAULING Rna 5 (9), 1138-1139, 1999	203	1999

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