| Knowledge-based analysis of microarray gene expression data by using support vector machines MPS Brown, WN Grundy, D Lin, N Cristianini, CW Sugnet, TS Furey, ... Proceedings of the National Academy of Sciences 97 (1), 262-267, 2000 | 3016 | 2000 |
| RNA: A laboratory manual. DC Rio, M Ares Jr, GJ Hannon, TW Nilsen RNA: a laboratory manual., 2011 | 1043* | 2011 |
| An RNA gene expressed during cortical development evolved rapidly in humans KS Pollard, SR Salama, N Lambert, MA Lambot, S Coppens, JS Pedersen, ... Nature 443 (7108), 167-172, 2006 | 979 | 2006 |
| Context-dependent control of alternative splicing by RNA-binding proteins XD Fu, M Ares Jr Nature Reviews Genetics 15 (10), 689-701, 2014 | 598 | 2014 |
| A post-transcriptional regulatory switch in polypyrimidine tract-binding proteins reprograms alternative splicing in developing neurons PL Boutz, P Stoilov, Q Li, CH Lin, G Chawla, K Ostrow, L Shiue, M Ares, ... Genes & development 21 (13), 1636-1652, 2007 | 511 | 2007 |
| Ultraconserved elements are associated with homeostatic control of splicing regulators by alternative splicing and nonsense-mediated decay JZ Ni, L Grate, JP Donohue, C Preston, N Nobida, G O’Brien, L Shiue, ... Genes & development 21 (6), 708-718, 2007 | 494 | 2007 |
| Genomewide analysis of mRNA processing in yeast using splicing-specific microarrays TA Clark, CW Sugnet, M Ares Science 296 (5569), 907-910, 2002 | 473 | 2002 |
| Depletion of U3 small nucleolar RNA inhibits cleavage in the 5′ external transcribed spacer of yeast pre‐ribosomal RNA and impairs formation of 18S ribosomal RNA. JMX Hughes, M Ares Jr The EMBO journal 10 (13), 4231-4239, 1991 | 396 | 1991 |
| Integrative genome-wide analysis reveals cooperative regulation of alternative splicing by hnRNP proteins SC Huelga, AQ Vu, JD Arnold, TY Liang, PP Liu, BY Yan, JP Donohue, ... Cell reports 1 (2), 167-178, 2012 | 367 | 2012 |
| Genome-wide bioinformatic and molecular analysis of introns in Saccharomyces cerevisiae. M Spingola, L Grate, D Haussler, M Ares Rna 5 (2), 221-234, 1999 | 353 | 1999 |
| Aberrant alternative splicing and extracellular matrix gene expression in mouse models of myotonic dystrophy H Du, MS Cline, RJ Osborne, DL Tuttle, TA Clark, JP Donohue, MP Hall, ... Nature structural & molecular biology 17 (2), 187, 2010 | 306 | 2010 |
| Transcriptome and genome conservation of alternative splicing events in humans and mice CW Sugnet, WJ Kent, M Ares Jr, D Haussler Biocomputing 2004, 66-77, 2003 | 276 | 2003 |
| Accumulation of unstable promoter-associated transcripts upon loss of the nuclear exosome subunit Rrp6p in Saccharomycescerevisiae CA Davis, M Ares Proceedings of the National Academy of Sciences 103 (9), 3262-3267, 2006 | 270 | 2006 |
| The splicing regulator Rbfox1 (A2BP1) controls neuronal excitation in the mammalian brain LT Gehman, P Stoilov, J Maguire, A Damianov, CH Lin, L Shiue, M Ares, ... Nature genetics 43 (7), 706-711, 2011 | 266 | 2011 |
| RNase III cleaves eukaryotic preribosomal RNA at a U3 snoRNP-dependent site S Abou Elela, H Igel, M Ares Jr Cell 85 (1), 115-124, 1996 | 257 | 1996 |
| Muscleblind-like 2-mediated alternative splicing in the developing brain and dysregulation in myotonic dystrophy K Charizanis, KY Lee, R Batra, M Goodwin, C Zhang, Y Yuan, L Shiue, ... Neuron 75 (3), 437-450, 2012 | 253 | 2012 |
| RBPmap: a web server for mapping binding sites of RNA-binding proteins I Paz, I Kosti, M Ares Jr, M Cline, Y Mandel-Gutfreund Nucleic acids research 42 (W1), W361-W367, 2014 | 243 | 2014 |
| Genome-wide analysis reveals SR protein cooperation and competition in regulated splicing S Pandit, Y Zhou, L Shiue, G Coutinho-Mansfield, H Li, J Qiu, J Huang, ... Molecular cell 50 (2), 223-235, 2013 | 239 | 2013 |
| Unusual intron conservation near tissue-regulated exons found by splicing microarrays CW Sugnet, K Srinivasan, TA Clark, G O'Brien, MS Cline, H Wang, ... PLoS Comput Biol 2 (1), e4, 2006 | 230 | 2006 |
| Test of intron predictions reveals novel splice sites, alternatively spliced mRNAs and new introns in meiotically regulated genes of yeast CA Davis, L Grate, M Spingola, M Ares Jr Nucleic acids research 28 (8), 1700-1706, 2000 | 191 | 2000 |
David HausslerScientific Director, UC Santa Cruz Genomics Institute, University of California, Santa CruzVerified email at soe.ucsc.edu
