Karsten Krug
Karsten Krug
Computational Scientist, The Broad Institute of MIT and Harvard
Verified email at broadinstitute.org
Title
Cited by
Cited by
Year
Proteogenomics connects somatic mutations to signalling in breast cancer
P Mertins, DR Mani, KV Ruggles, MA Gillette, KR Clauser, P Wang, ...
Nature 534 (7605), 55-62, 2016
7132016
Proteogenomics of Pristionchus pacificus reveals distinct proteome structure of nematode models
N Borchert, C Dieterich, K Krug, W Schütz, S Jung, A Nordheim, ...
Genome research 20 (6), 837-846, 2010
1322010
Absolute proteome and phosphoproteome dynamics during the cell cycle of Schizosaccharomyces pombe (Fission Yeast)
A Carpy, K Krug, S Graf, A Koch, S Popic, S Hauf, B Macek
Molecular & Cellular Proteomics 13 (8), 1925-1936, 2014
1112014
Mitotic substrates of the kinase aurora with roles in chromatin regulation identified through quantitative phosphoproteomics of fission yeast
A Koch, K Krug, S Pengelley, B Macek, S Hauf
Science signaling 4 (179), rs6-rs6, 2011
1012011
Global dynamics of the Escherichia coli proteome and phosphoproteome during growth in minimal medium
NC Soares, P Spät, K Krug, B Macek
Journal of proteome research 12 (6), 2611-2621, 2013
872013
Proteome analysis of erythrocytes lacking AMP-activated protein kinase reveals a role of PAK2 kinase in eryptosis
C Zelenak, M Föller, A Velic, K Krug, SM Qadri, B Viollet, F Lang, ...
Journal of proteome research 10 (4), 1690-1697, 2011
852011
The neuropeptide complement of the marine annelid Platynereis dumerilii
M Conzelmann, EA Williams, K Krug, M Franz-Wachtel, B Macek, ...
BMC genomics 14 (1), 906, 2013
842013
Characterization of the E. coli proteome and its modifications during growth and ethanol stress
B Soufi, K Krug, A Harst, B Macek
Frontiers in microbiology 6, 2015
772015
Methods, tools and current perspectives in proteogenomics
KV Ruggles, K Krug, X Wang, KR Clauser, J Wang, SH Payne, D Fenyö, ...
Molecular & Cellular Proteomics 16 (6), 959-981, 2017
692017
Global detection of protein kinase D-dependent phosphorylation events in nocodazole-treated human cells
M Franz-Wachtel, SA Eisler, K Krug, S Wahl, A Carpy, A Nordheim, ...
Molecular & Cellular Proteomics 11 (5), 160-170, 2012
662012
Reproducible workflow for multiplexed deep-scale proteome and phosphoproteome analysis of tumor tissues by liquid chromatography–mass spectrometry
P Mertins, LC Tang, K Krug, DJ Clark, MA Gritsenko, L Chen, KR Clauser, ...
Nature protocols 13 (7), 1632-1661, 2018
652018
Quantitative phosphoproteome analysis of Bacillus subtilis reveals novel substrates of the kinase PrkC and phosphatase PrpC
V Ravikumar, L Shi, K Krug, A Derouiche, C Jers, C Cousin, A Kobir, ...
Molecular & Cellular Proteomics 13 (8), 1965-1978, 2014
632014
Deep coverage of the Escherichia coli proteome enables the assessment of false discovery rates in simple proteogenomic experiments
K Krug, A Carpy, G Behrends, K Matic, NC Soares, B Macek
Molecular & Cellular Proteomics 12 (11), 3420-3430, 2013
552013
Extending SILAC to proteomics of plant cell lines
W Schütz, N Hausmann, K Krug, R Hampp, B Macek
The Plant Cell 23 (5), 1701-1705, 2011
492011
PPM1D-truncating mutations confer resistance to chemotherapy and sensitivity to PPM1D inhibition in hematopoietic cells
JD Kahn, PG Miller, AJ Silver, RS Sellar, S Bhatt, C Gibson, M McConkey, ...
Blood 132 (11), 1095-1105, 2018
472018
Mass spectrometry at the interface of proteomics and genomics
K Krug, S Nahnsen, B Macek
Molecular BioSystems 7 (2), 284-291, 2011
422011
Proteomics, post-translational modifications, and integrative analyses reveal molecular heterogeneity within medulloblastoma subgroups
TC Archer, T Ehrenberger, F Mundt, MP Gold, K Krug, CK Mah, ...
Cancer Cell 34 (3), 396-410. e8, 2018
382018
Antibodies to biotin enable large-scale detection of biotinylation sites on proteins
ND Udeshi, K Pedram, T Svinkina, S Fereshetian, SA Myers, O Aygun, ...
nature methods 14 (12), 1167, 2017
372017
Proteome-wide measurement of non-canonical bacterial mistranslation by quantitative mass spectrometry of protein modifications
N Cvetesic, M Semanjski, B Soufi, K Krug, I Gruic-Sovulj, B Macek
Scientific reports 6, 28631, 2016
282016
Mass Spectrometry–Based Proteomics Reveals Potential Roles of NEK9 and MAP2K4 in Resistance to PI3K Inhibition in Triple-Negative Breast Cancers
F Mundt, S Rajput, S Li, KV Ruggles, AD Mooradian, P Mertins, ...
Cancer research 78 (10), 2732-2746, 2018
232018
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