Karsten Krug
Karsten Krug
Computational Scientist, The Broad Institute of MIT and Harvard
Verified email at broadinstitute.org
Cited by
Cited by
Proteogenomics connects somatic mutations to signalling in breast cancer
P Mertins, DR Mani, KV Ruggles, MA Gillette, KR Clauser, P Wang, ...
Nature 534 (7605), 55-62, 2016
Proteogenomics of Pristionchus pacificus reveals distinct proteome structure of nematode models
N Borchert, C Dieterich, K Krug, W Schütz, S Jung, A Nordheim, ...
Genome research 20 (6), 837-846, 2010
Absolute proteome and phosphoproteome dynamics during the cell cycle of Schizosaccharomyces pombe (Fission Yeast)
A Carpy, K Krug, S Graf, A Koch, S Popic, S Hauf, B Macek
Molecular & Cellular Proteomics 13 (8), 1925-1936, 2014
Mitotic substrates of the kinase aurora with roles in chromatin regulation identified through quantitative phosphoproteomics of fission yeast
A Koch, K Krug, S Pengelley, B Macek, S Hauf
Science signaling 4 (179), rs6-rs6, 2011
Global dynamics of the Escherichia coli proteome and phosphoproteome during growth in minimal medium
NC Soares, P Spät, K Krug, B Macek
Journal of proteome research 12 (6), 2611-2621, 2013
Proteome analysis of erythrocytes lacking AMP-activated protein kinase reveals a role of PAK2 kinase in eryptosis
C Zelenak, M Föller, A Velic, K Krug, SM Qadri, B Viollet, F Lang, ...
Journal of proteome research 10 (4), 1690-1697, 2011
The neuropeptide complement of the marine annelid Platynereis dumerilii
M Conzelmann, EA Williams, K Krug, M Franz-Wachtel, B Macek, ...
BMC genomics 14 (1), 906, 2013
Characterization of the E. coli proteome and its modifications during growth and ethanol stress
B Soufi, K Krug, A Harst, B Macek
Frontiers in microbiology 6, 2015
Reproducible workflow for multiplexed deep-scale proteome and phosphoproteome analysis of tumor tissues by liquid chromatography–mass spectrometry
P Mertins, LC Tang, K Krug, DJ Clark, MA Gritsenko, L Chen, KR Clauser, ...
Nature protocols 13 (7), 1632-1661, 2018
Methods, tools and current perspectives in proteogenomics
KV Ruggles, K Krug, X Wang, KR Clauser, J Wang, SH Payne, D Fenyö, ...
Molecular & Cellular Proteomics 16 (6), 959-981, 2017
Global detection of protein kinase D-dependent phosphorylation events in nocodazole-treated human cells
M Franz-Wachtel, SA Eisler, K Krug, S Wahl, A Carpy, A Nordheim, ...
Molecular & Cellular Proteomics 11 (5), 160-170, 2012
Quantitative phosphoproteome analysis of Bacillus subtilis reveals novel substrates of the kinase PrkC and phosphatase PrpC
V Ravikumar, L Shi, K Krug, A Derouiche, C Jers, C Cousin, A Kobir, ...
Molecular & Cellular Proteomics 13 (8), 1965-1978, 2014
Deep coverage of the Escherichia coli proteome enables the assessment of false discovery rates in simple proteogenomic experiments
K Krug, A Carpy, G Behrends, K Matic, NC Soares, B Macek
Molecular & Cellular Proteomics 12 (11), 3420-3430, 2013
PPM1D-truncating mutations confer resistance to chemotherapy and sensitivity to PPM1D inhibition in hematopoietic cells
JD Kahn, PG Miller, AJ Silver, RS Sellar, S Bhatt, C Gibson, M McConkey, ...
Blood 132 (11), 1095-1105, 2018
Extending SILAC to proteomics of plant cell lines
W Schütz, N Hausmann, K Krug, R Hampp, B Macek
The Plant Cell 23 (5), 1701-1705, 2011
Proteomics, post-translational modifications, and integrative analyses reveal molecular heterogeneity within medulloblastoma subgroups
TC Archer, T Ehrenberger, F Mundt, MP Gold, K Krug, CK Mah, ...
Cancer Cell 34 (3), 396-410. e8, 2018
Mass spectrometry at the interface of proteomics and genomics
K Krug, S Nahnsen, B Macek
Molecular BioSystems 7 (2), 284-291, 2011
Antibodies to biotin enable large-scale detection of biotinylation sites on proteins
ND Udeshi, K Pedram, T Svinkina, S Fereshetian, SA Myers, O Aygun, ...
Nature methods 14 (12), 1167-1170, 2017
Proteome-wide measurement of non-canonical bacterial mistranslation by quantitative mass spectrometry of protein modifications
N Cvetesic, M Semanjski, B Soufi, K Krug, I Gruic-Sovulj, B Macek
Scientific reports 6, 28631, 2016
Mass Spectrometry–Based Proteomics Reveals Potential Roles of NEK9 and MAP2K4 in Resistance to PI3K Inhibition in Triple-Negative Breast Cancers
F Mundt, S Rajput, S Li, KV Ruggles, AD Mooradian, P Mertins, ...
Cancer research 78 (10), 2732-2746, 2018
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