| Onionnet: a multiple-layer intermolecular-contact-based convolutional neural network for protein–ligand binding affinity prediction L Zheng, J Fan, Y Mu ACS omega 4 (14), 15956-15965, 2019 | 228 | 2019 |
| Structure and interactions of a host defense antimicrobial peptide thanatin in lipopolysaccharide micelles reveal mechanism of bacterial cell agglutination S Sinha, L Zheng, Y Mu, WJ Ng, S Bhattacharjya Scientific reports 7 (1), 17795, 2017 | 99 | 2017 |
| Improving protein–ligand docking and screening accuracies by incorporating a scoring function correction term L Zheng, J Meng, K Jiang, H Lan, Z Wang, M Lin, W Li, H Guo, Y Wei, ... Briefings in Bioinformatics 23 (3), bbac051, 2022 | 62 | 2022 |
| OnionNet-2: a convolutional neural network model for predicting protein-ligand binding affinity based on residue-atom contacting shells Z Wang, L Zheng, Y Liu, Y Qu, YQ Li, M Zhao, Y Mu, W Li Frontiers in chemistry 9, 753002, 2021 | 59 | 2021 |
| Comprehensive Analysis of ERK1/2 Substrates for Potential Combination Immunotherapies L Yang, L Zheng, WJ Chng, JL Ding Trends in Pharmacological Sciences 40 (11), 2019 | 49 | 2019 |
| Molecular dynamics and simulation L Zheng, AA Alhossary, CK Kwoh, Y Mu Academic Press, 2019 | 38 | 2019 |
| Fimbrin phosphorylation by metaphase Cdk1 regulates actin cable dynamics in budding yeast Y Miao, X Han, L Zheng, Y Xie, Y Mu, JR Yates III, DG Drubin Nature communications 7 (1), 11265, 2016 | 38 | 2016 |
| Phospho‐regulation of intrinsically disordered proteins for actin assembly and endocytosis Y Miao, T Tipakornsaowapak, L Zheng, Y Mu, E Lewellyn The FEBS journal 285 (15), 2762-2784, 2018 | 36 | 2018 |
| When homologous sequences meet structural decoys: Accurate contact prediction by tFold in CASP14—(tFold for CASP14 contact prediction) T Shen, J Wu, H Lan, L Zheng, J Pei, S Wang, W Liu, J Huang Proteins: Structure, Function, and Bioinformatics 89 (12), 1901-1910, 2021 | 35 | 2021 |
| E2Efold-3D: end-to-end deep learning method for accurate de novo RNA 3D structure prediction T Shen, Z Hu, Z Peng, J Chen, P Xiong, L Hong, L Zheng, Y Wang, I King, ... arXiv preprint arXiv:2207.01586, 2022 | 32 | 2022 |
| A fully differentiable ligand pose optimization framework guided by deep learning and a traditional scoring function Z Wang, L Zheng, S Wang, M Lin, Z Wang, AWK Kong, Y Mu, Y Wei, W Li Briefings in Bioinformatics 24 (1), bbac520, 2023 | 24 | 2023 |
| Exploring flexibility of progesterone receptor ligand binding domain using molecular dynamics L Zheng, VC Lin, Y Mu PloS one 11 (11), e0165824, 2016 | 19 | 2016 |
| Structure prediction of the entire proteome of monkeypox variants L Zheng, J Meng, M Lin, R Lv, H Cheng, L Zou, J Sun, LX Li, R Ren, ... Acta Materia Medica 1 (2), 260-264, 2022 | 17 | 2022 |
| Incorporating GC pair-recognizing guanidinium into PNAs for sequence and structure specific recognition of dsRNAs over dsDNAs and ssRNAs MS Krishna, Z Wang, L Zheng, J Bowry, AAL Ong, Y Mu, M Prabakaran, ... Biochemistry 58 (36), 3777-3788, 2019 | 17 | 2019 |
| Dynamics changes of CRISPR-Cas9 systems induced by high fidelity mutations L Zheng, J Shi, Y Mu Physical Chemistry Chemical Physics 20 (43), 27439-27448, 2018 | 16 | 2018 |
| Boosting the predictive performance with aqueous solubility dataset curation J Meng, P Chen, M Wahib, M Yang, L Zheng, Y Wei, S Feng, W Liu Scientific Data 9 (1), 71, 2022 | 12 | 2022 |
| Application of variational graph encoders as an effective generalist algorithm in computer-aided drug design HYI Lam, R Pincket, H Han, XE Ong, Z Wang, J Hinks, Y Wei, W Li, ... Nature Machine Intelligence 5 (7), 754-764, 2023 | 7 | 2023 |
| fastmsa: Accelerating multiple sequence alignment with dense retrieval on protein language L Hong, S Sun, L Zheng, Q Tan, Y Li bioRxiv, 2021.12. 20.473431, 2021 | 7 | 2021 |
| Ligand binding induces agonistic-like conformational adaptations in helix 12 of progesterone receptor ligand binding domain L Zheng, K Xia, Y Mu Frontiers in Chemistry 7, 315, 2019 | 6 | 2019 |
| zPoseScore model for accurate and robust protein–ligand docking pose scoring in CASP15 Tao Shen, Fuxu Liu, Zechen Wang, Jinyuan Sun, Yifan Bu, Jintao Meng, Weihua ... Proteins: Structure, Function and Bioinformatics 1 (13), 2023 | 4* | 2023 |
Yuguang MuAssociate Professor of Computer BiologyVerified email at ntu.edu.sg
