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Yuzhen Ye
Yuzhen Ye
Bestätigte E-Mail-Adresse bei indiana.edu
Titel
Zitiert von
Zitiert von
Jahr
Structure, function and diversity of the healthy human microbiome
nature 486 (7402), 207-214, 2012
85162012
The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes
R Overbeek, T Begley, RM Butler, JV Choudhuri, HY Chuang, M Cohoon, ...
Nucleic acids research 33 (17), 5691-5702, 2005
20942005
A framework for human microbiome research
nature 486 (7402), 215-221, 2012
19892012
The ecoresponsive genome of Daphnia pulex
JK Colbourne, ME Pfrender, D Gilbert, WK Thomas, A Tucker, TH Oakley, ...
Science 331 (6017), 555-561, 2011
12522011
FragGeneScan: predicting genes in short and error-prone reads
M Rho, H Tang, Y Ye
Nucleic acids research 38 (20), e191-e191, 2010
7232010
Flexible structure alignment by chaining aligned fragment pairs allowing twists
Y Ye, A Godzik
Bioinformatics 19 (suppl_2), ii246-ii255, 2003
6802003
A Core human microbiome as viewed through 16S rRNA sequence clusters
SM Huse, Y Ye, Y Zhou, AA Fodor
PloS one 7 (6), e34242, 2012
5772012
The amphioxus genome illuminates vertebrate origins and cephalochordate biology
LZ Holland, R Albalat, K Azumi, È Benito-Gutiérrez, MJ Blow, ...
Genome research 18 (7), 1100-1111, 2008
5392008
RAPSearch2: a fast and memory-efficient protein similarity search tool for next-generation sequencing data
Y Zhao, H Tang, Y Ye
Bioinformatics 28 (1), 125-126, 2012
4002012
A parsimony approach to biological pathway reconstruction/inference for genomes and metagenomes
Y Ye, TG Doak
PLoS computational biology 5 (8), e1000465, 2009
3742009
FATCAT: a web server for flexible structure comparison and structure similarity searching
Y Ye, A Godzik
Nucleic acids research 32 (suppl_2), W582-W585, 2004
3692004
Comparing bacterial communities inferred from 16S rRNA gene sequencing and shotgun metagenomics
N Shah, H Tang, TG Doak, Y Ye
Biocomputing 2011, 165-176, 2011
2142011
Metagenomics: facts and artifacts, and computational challenges
JC Wooley, Y Ye
Journal of computer science and technology 25 (1), 71-81, 2010
2052010
Diverse CRISPRs Evolving in Human Microbiomes
M Rho, YW Wu, H Tang, TG Doak, Y Ye
PLoS Genetics 8 (6), e1002441, 2012
1842012
A Novel Abundance-Based Algorithm for Binning Metagenomic Sequences Using l-tuples
YW Wu, Y Ye
Journal of Computational Biology 18 (3), 523-534, 2011
1642011
Multiple flexible structure alignment using partial order graphs
Y Ye, A Godzik
Bioinformatics 21 (10), 2362-2369, 2005
1612005
RAPSearch: a fast protein similarity search tool for short reads
Y Ye, JH Choi, H Tang
BMC bioinformatics 12 (1), 1-10, 2011
1402011
Identification and quantification of abundant species from pyrosequences of 16S rRNA by consensus alignment
Y Ye
2010 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2010
1392010
The “most wanted” taxa from the human microbiome for whole genome sequencing
AA Fodor, TZ DeSantis, KM Wylie, JH Badger, Y Ye, T Hepburn, P Hu, ...
Public Library of Science 7 (7), e41294, 2012
1222012
Not all predicted CRISPR–Cas systems are equal: isolated cas genes and classes of CRISPR like elements
Q Zhang, Y Ye
BMC bioinformatics 18 (1), 1-12, 2017
1202017
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