| Wnt addiction of genetically defined cancers reversed by PORCN inhibition B Madan, Z Ke, N Harmston, SY Ho, AO Frois, J Alam, DA Jeyaraj, ... Oncogene 35 (17), 2197-2207, 2016 | 321 | 2016 |
| Squidpy: a scalable framework for spatial omics analysis G Palla, H Spitzer, M Klein, D Fischer, AC Schaar, LB Kuemmerle, ... Nature methods 19 (2), 171-178, 2022 | 304 | 2022 |
| Mural lymphatic endothelial cells regulate meningeal angiogenesis in the zebrafish NI Bower, K Koltowska, C Pichol-Thievend, I Virshup, S Paterson, ... Nature neuroscience 20 (6), 774-783, 2017 | 92 | 2017 |
| anndata: Annotated data I Virshup, S Rybakov, FJ Theis, P Angerer, FA Wolf BioRxiv, 2021.12. 16.473007, 2021 | 90 | 2021 |
| The impact of APP on Alzheimer-like pathogenesis and gene expression in down syndrome iPSC-derived neurons DA Ovchinnikov, O Korn, I Virshup, CA Wells, EJ Wolvetang Stem cell reports 11 (1), 32-42, 2018 | 72 | 2018 |
| Squidpy: a scalable framework for spatial single cell analysis G Palla, H Spitzer, M Klein, D Fischer, AC Schaar, LB Kuemmerle, ... BioRxiv, 2021.02. 19.431994, 2021 | 55 | 2021 |
| The scverse project provides a computational ecosystem for single-cell omics data analysis I Virshup, D Bredikhin, L Heumos, G Palla, G Sturm, A Gayoso, I Kats, ... Nature biotechnology 41 (5), 604-606, 2023 | 53 | 2023 |
| Human CD141+ Dendritic Cell and CD1c+ Dendritic Cell Undergo Concordant Early Genetic Programming after Activation in Humanized Mice In Vivo Y Minoda, I Virshup, I Leal Rojas, O Haigh, Y Wong, JJ Miles, CA Wells, ... Frontiers in immunology 8, 1419, 2017 | 49 | 2017 |
| OME-Zarr: a cloud-optimized bioimaging file format with international community support J Moore, D Basurto-Lozada, S Besson, J Bogovic, J Bragantini, EM Brown, ... Histochemistry and Cell Biology 160 (3), 223-251, 2023 | 31 | 2023 |
| Alexander Wolf I Virshup, S Rybakov, FJ Theis, P Angerer F. anndata: Annotated data. bioRxiv 16, 2021, 2021 | 19 | 2021 |
| SpatialData: an open and universal data framework for spatial omics L Marconato, G Palla, KA Yamauchi, I Virshup, E Heidari, T Treis, ... Nature Methods, 1-5, 2024 | 15 | 2024 |
| Matrix and analysis metadata standards (MAMS) to facilitate harmonization and reproducibility of single-cell data Y Wang, I Sarfraz, WK Teh, A Sokolov, BR Herb, HH Creasy, I Virshup, ... bioRxiv, 2023 | 2 | 2023 |
| constclust: consistent clusters for scRNA-seq I Virshup, J Choi, KA Lê Cao, CA Wells bioRxiv, 2020.12. 08.417105, 2020 | 1 | 2020 |
| Exploratory electronic health record analysis with ehrapy L Heumos, P Ehmele, T Treis, J Upmeier zu Belzen, A Namsaraeva, ... medRxiv, 2023.12. 11.23299816, 2023 | | 2023 |
