Alessio Milanese
Alessio Milanese
Scientist, DSM
Verified email at - Homepage
Cited by
Cited by
Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer
J Wirbel, PT Pyl, E Kartal, K Zych, A Kashani, A Milanese, JS Fleck, ...
Nature medicine 25 (4), 679-689, 2019
Microbial abundance, activity and population genomic profiling with mOTUs2
A Milanese, DR Mende, L Paoli, G Salazar, HJ Ruscheweyh, M Cuenca, ...
Nature communications 10 (1), 1014, 2019
Unravelling the collateral damage of antibiotics on gut bacteria
L Maier, CV Goemans, J Wirbel, M Kuhn, C Eberl, M Pruteanu, P Müller, ...
Nature 599 (7883), 120-124, 2021
Critical assessment of metagenome interpretation: the second round of challenges
F Meyer, A Fritz, ZL Deng, D Koslicki, TR Lesker, A Gurevich, G Robertson, ...
Nature methods 19 (4), 429-440, 2022
Metabolic cooperation and spatiotemporal niche partitioning in a kefir microbial community
S Blasche, Y Kim, RAT Mars, D Machado, M Maansson, E Kafkia, ...
Nature Microbiology, 1-13, 2021
Biosynthetic potential of the global ocean microbiome
L Paoli, HJ Ruscheweyh, CC Forneris, F Hubrich, S Kautsar, A Bhushan, ...
Nature 607 (7917), 111-118, 2022
proGenomes2: an improved database for accurate and consistent habitat, taxonomic and functional annotations of prokaryotic genomes
DR Mende, I Letunic, OM Maistrenko, TSB Schmidt, A Milanese, L Paoli, ...
Nucleic acids research 48 (D1), D621-D625, 2020
The SIB Swiss Institute of Bioinformatics’ resources: focus on curated databases
SIB Swiss Institute of Bioinformatics Members
Nucleic acids research 44 (D1), D27-D37, 2016
Magnetosomes Extracted from Magnetospirillum gryphiswaldense as Theranostic Agents in an Experimental Model of Glioblastoma
S Mannucci, S Tambalo, G Conti, L Ghin, A Milanese, A Carboncino, ...
Contrast media & molecular imaging 2018 (1), 2198703, 2018
Calorie restriction improves metabolic state independently of gut microbiome composition: a randomized dietary intervention trial
SA Sowah, A Milanese, R Schübel, J Wirbel, E Kartal, TS Johnson, ...
Genome medicine 14 (1), 30, 2022
Changes in plasma short-chain fatty acid levels after dietary weight loss among overweight and obese adults over 50 weeks
SA Sowah, F Hirche, A Milanese, TS Johnson, M Grafetstätter, R Schübel, ...
Nutrients 12 (2), 452, 2020
Cultivation-independent genomes greatly expand taxonomic-profiling capabilities of mOTUs across various environments
HJ Ruscheweyh, A Milanese, L Paoli, N Karcher, Q Clayssen, MI Keller, ...
Microbiome 10 (1), 212, 2022
Accurate de novo identification of biosynthetic gene clusters with GECCO
LM Carroll, M Larralde, JS Fleck, R Ponnudurai, A Milanese, E Cappio, ...
BioRxiv, 2021.05. 03.442509, 2021
proGenomes3: approaching one million accurately and consistently annotated high-quality prokaryotic genomes
A Fullam, I Letunic, TSB Schmidt, QR Ducarmon, N Karcher, S Khedkar, ...
Nucleic acids research 51 (D1), D760-D766, 2023
Microbial abundance, activity and population genomic profiling with mOTUs2. Nat Commun 10: 1014
A Milanese, DR Mende, L Paoli, G Salazar, HJ Ruscheweyh, M Cuenca, ...
mOTUs: profiling taxonomic composition, transcriptional activity and strain populations of microbial communities
HJ Ruscheweyh, A Milanese, L Paoli, A Sintsova, DR Mende, G Zeller, ...
Current Protocols 1 (8), e218, 2021
Dissecting the collateral damage of antibiotics on gut microbes
L Maier, CV Goemans, M Pruteanu, J Wirbel, M Kuhn, E Cacace, ...
BioRxiv, 2020.01. 09.893560, 2020
Systematic analysis of drug combinations against Gram-positive bacteria
E Cacace, V Kim, V Varik, M Knopp, M Tietgen, A Brauer-Nikonow, ...
Nature Microbiology 8 (11), 2196-2212, 2023
An investigation on genomic repeats
G Franco, A Milanese
Conference on Computability in Europe, 149-160, 2013
A genome analysis based on repeat sharing gene networks
A Castellini, G Franco, A Milanese
Natural computing 14, 403-420, 2015
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