| MAFFT-DASH: integrated protein sequence and structural alignment J Rozewicki, S Li, KM Amada, DM Standley, K Katoh Nucleic acids research 47 (W1), W5-W10, 2019 | 582 | 2019 |
| An infectivity-enhancing site on the SARS-CoV-2 spike protein targeted by antibodies Y Liu, WT Soh, J Kishikawa, M Hirose, EE Nakayama, S Li, M Sasai, ... Cell 184 (13), 3452-3466. e18, 2021 | 224 | 2021 |
| TLR4-induced NF-κB and MAPK signaling regulate the IL-6 mRNA stabilizing protein Arid5a KK Nyati, K Masuda, MMU Zaman, PK Dubey, D Millrine, JP Chalise, ... Nucleic acids research 45 (5), 2687-2703, 2017 | 155 | 2017 |
| Improved prediction of lysine acetylation by support vector machines S Li, H Li, M Li, Y Shyr, L Xie, Y Li Protein and peptide letters 16 (8), 977-983, 2009 | 119 | 2009 |
| A model for Escherichia coli chromosome packaging supports transcription factor-induced DNA domain formation M Fritsche, S Li, DW Heermann, PA Wiggins Nucleic acids research 40 (3), 972-980, 2012 | 91 | 2012 |
| Structural basis for the assembly of the Ragulator-Rag GTPase complex R Yonehara, S Nada, T Nakai, M Nakai, A Kitamura, A Ogawa, ... Nature communications 8 (1), 1625, 2017 | 71 | 2017 |
| Quantifying sequence and structural features of protein–RNA interactions S Li, K Yamashita, KM Amada, DM Standley Nucleic acids research 42 (15), 10086-10098, 2014 | 70 | 2014 |
| Repertoire Builder: high-throughput structural modeling of B and T cell receptors D Schritt, S Li, J Rozewicki, K Katoh, K Yamashita, W Volkmuth, G Cavet, ... Molecular Systems Design & Engineering 4 (4), 761-768, 2019 | 65 | 2019 |
| Arid5a stabilizes OX40 mRNA in murine CD4+ T cells by recognizing a stem‐loop structure in its 3′UTR H Hanieh, K Masuda, H Metwally, JP Chalise, M Mohamed, KK Nyati, ... European journal of immunology 48 (4), 593-604, 2018 | 47 | 2018 |
| Flexible, functional, and familiar: characteristics of SARS-CoV-2 spike protein evolution DS Saputri, S Li, FJ Van Eerden, J Rozewicki, Z Xu, HS Ismanto, A Davila, ... Frontiers in microbiology 11, 577820, 2020 | 40 | 2020 |
| An engineered ACE2 decoy neutralizes the SARS-CoV-2 Omicron variant and confers protection against infection in vivo N Ikemura, S Taminishi, T Inaba, T Arimori, D Motooka, K Katoh, Y Kirita, ... Science translational medicine 14 (650), eabn7737, 2022 | 38 | 2022 |
| Dysregulated expression of the nuclear exosome targeting complex component Rbm7 in nonhematopoietic cells licenses the development of fibrosis K Fukushima, T Satoh, F Sugihara, Y Sato, T Okamoto, Y Mitsui, S Yoshio, ... Immunity 52 (3), 542-556. e13, 2020 | 38 | 2020 |
| Noncanonical STAT1 phosphorylation expands its transcriptional activity into promoting LPS-induced IL-6 and IL-12p40 production H Metwally, T Tanaka, S Li, G Parajuli, S Kang, H Hanieh, S Hashimoto, ... Science signaling 13 (624), eaay0574, 2020 | 31 | 2020 |
| The SARS-CoV-2 Delta variant is poised to acquire complete resistance to wild-type spike vaccines Y Liu, N Arase, J Kishikawa, M Hirose, S Li, A Tada, S Matsuoka, ... BioRxiv, 2021.08. 22.457114, 2021 | 29 | 2021 |
| Clonal evolution and antigen recognition of anti-nuclear antibodies in acute systemic lupus erythematosus S Sakakibara, T Arimori, K Yamashita, H Jinzai, D Motooka, S Nakamura, ... Scientific Reports 7 (1), 16428, 2017 | 29 | 2017 |
| Methods for sequence and structural analysis of B and T cell receptor repertoires S Teraguchi, DS Saputri, MA Llamas-Covarrubias, A Davila, D Diez, ... Computational and Structural Biotechnology Journal 18, 2000-2011, 2020 | 26 | 2020 |
| AbAdapt: an adaptive approach to predicting antibody–antigen complex structures from sequence A Davila, Z Xu, S Li, J Rozewicki, J Wilamowski, S Kotelnikov, D Kozakov, ... Bioinformatics Advances 2 (1), vbac015, 2022 | 19 | 2022 |
| Various miRNAs compensate the role of miR-122 on HCV replication C Ono, T Fukuhara, S Li, J Wang, A Sato, T Izumi, Y Fauzyah, ... PLoS pathogens 16 (6), e1008308, 2020 | 18 | 2020 |
| RNA–LIM: A novel procedure for analyzing protein/single-stranded RNA propensity data with concomitant estimation of interface structure D Hall, S Li, K Yamashita, R Azuma, JA Carver, DM Standley Analytical biochemistry 472, 52-61, 2015 | 15 | 2015 |
| Structural modeling of lymphocyte receptors and their antigens S Li, J Wilamowski, S Teraguchi, FJ van Eerden, J Rozewicki, A Davila, ... In Vitro Differentiation of T-Cells: Methods and Protocols, 207-229, 2019 | 13 | 2019 |
