| Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species KR Bradnam, JN Fass, A Alexandrov, P Baranay, M Bechner, I Birol, ... Gigascience 2 (1), 2047-217X-2-10, 2013 | 794 | 2013 |
| Application of the Apn2/MAT locus to improve the systematics of the Colletotrichum gloeosporioides complex: an example from coffee (Coffea spp.) hosts DN Silva, P Talhinhas, V Várzea, L Cai, OS Paulo, D Batista Mycologia 104 (2), 396-409, 2012 | 204 | 2012 |
| Phylogeny of the most species-rich freshwater bivalve family (Bivalvia: Unionida: Unionidae): Defining modern subfamilies and tribes M Lopes-Lima, E Froufe, M Ghamizi, KE Mock, Ü Kebapçı, O Klishko, ... Molecular Phylogenetics and Evolution 106, 174-191, 2017 | 180 | 2017 |
| Modelling wildlife distributions: logistic multiple regression vs overlap analysis C Brito, EG Crespo, OS Paulo Ecography 22 (3), 251-260, 1999 | 155 | 1999 |
| The era of reference genomes in conservation genomics G Formenti, K Theissinger, C Fernandes, I Bista, A Bombarely, C Bleidorn, ... Trends in ecology & evolution 37 (3), 197-202, 2022 | 147 | 2022 |
| The persistence of Pliocene populations through the Pleistocene climatic cycles: evidence from the phylogeography of an Iberian lizard OS Paulo, C Dias, MW Bruford, WC Jordan, RA Nichols Proceedings of the Royal Society of London. Series B: Biological Sciences …, 2001 | 139 | 2001 |
| The role of vicariance vs. dispersal in shaping genetic patterns in ocellated lizard species in the western Mediterranean OS Paulo, J Pinheiro, A Miraldo, MW Bruford, WC Jordan, RA Nichols Molecular Ecology 17 (6), 1535-1551, 2008 | 109 | 2008 |
| Structure_threader: An improved method for automation and parallelization of programs structure, fastStructure and MavericK on multicore CPU systems F Pina‐Martins, DN Silva, J Fino, OS Paulo Molecular ecology resources 17 (6), e268-e274, 2017 | 97 | 2017 |
| Phylogeography and demographic history of Lacerta lepida in the Iberian Peninsula: multiple refugia, range expansions and secondary contact zones A Miraldo, GM Hewitt, OS Paulo, BC Emerson BMC evolutionary biology 11, 1-19, 2011 | 88 | 2011 |
| Host‐jump drives rapid and recent ecological speciation of the emergent fungal pathogen Colletotrichum kahawae DN Silva, P Talhinhas, LEI Cai, L Manuel, EK Gichuru, A Loureiro, ... Molecular Ecology 21 (11), 2655-2670, 2012 | 85 | 2012 |
| Systematic and phylogeographical assessment of the Acanthodactylus erythrurus group (Reptilia: Lacertidae) based on phylogenetic analyses of mitochondrial and nuclear DNA MM Fonseca, JC Brito, OS Paulo, MA Carretero, DJ Harris Molecular Phylogenetics and Evolution 51 (2), 131-142, 2009 | 78 | 2009 |
| Using nested clade analysis to assess the history of colonization and the persistence of populations of an Iberian lizard OS Paulo, WC Jordan, MW Bruford, RA Nichols Molecular Ecology 11 (4), 809-819, 2002 | 78 | 2002 |
| Global urban environmental change drives adaptation in white clover JS Santangelo, RW Ness, B Cohan, CR Fitzpatrick, SG Innes, S Koch, ... Science 375 (6586), 1275-1281, 2022 | 73 | 2022 |
| The double origin of Iberian peninsular chameleons OS Paulo, I Pinto, MW Bruford, WC Jordan, RA Nichols Biological Journal of the Linnean Society 75 (1), 1-7, 2002 | 73 | 2002 |
| concatenator: sequence data matrices handling made easy F PINA‐MARTINS, OS Paulo Molecular Ecology Resources 8 (6), 1254-1255, 2008 | 72 | 2008 |
| How genomics can help biodiversity conservation K Theissinger, C Fernandes, G Formenti, I Bista, PR Berg, C Bleidorn, ... Trends in genetics 39 (7), 545-559, 2023 | 71 | 2023 |
| Genetic and genomic tools to asssist sugar beet improvement: the value of the crop wild relatives F Monteiro, L Frese, S Castro, MC Duarte, OS Paulo, J Loureiro, ... Frontiers in plant science 9, 329741, 2018 | 71 | 2018 |
| Multiple approaches to detect outliers in a genome scan for selection in ocellated lizards (Lacerta lepida) along an environmental gradient VL Nunes, MA Beaumont, RK Butlin, OS Paulo Molecular Ecology 20 (2), 193-205, 2011 | 63 | 2011 |
| New insights into adaptation and population structure of cork oak using genotyping by sequencing F Pina‐Martins, J Baptista, G Pappas Jr, OS Paulo Global Change Biology 25 (1), 337-350, 2019 | 59 | 2019 |
| Oak root response to ectomycorrhizal symbiosis establishment: RNA-Seq derived transcript identification and expression profiling M Sebastiana, B Vieira, T Lino-Neto, F Monteiro, A Figueiredo, L Sousa, ... PLoS One 9 (5), e98376, 2014 | 57 | 2014 |
