Ribonucleotide incorporation in yeast genomic DNA shows preference for cytosine and guanosine preceded by deoxyadenosine S Balachander, AL Gombolay, T Yang, P Xu, G Newnam, H Keskin, ... Nature communications 11 (1), 2447, 2020 | 25 | 2020 |
Frequency and patterns of ribonucleotide incorporation around autonomously replicating sequences in yeast reveal the division of labor of replicative DNA polymerases P Xu, F Storici Nucleic Acids Research 49 (18), 10542-10557, 2021 | 7* | 2021 |
Disproportionate presence of adenosine in mitochondrial and chloroplast DNA of Chlamydomonas reinhardtii WMM El-Sayed, AL Gombolay, P Xu, T Yang, Y Jeon, S Balachander, ... Iscience 24 (1), 2021 | 7 | 2021 |
Increased novel single nucleotide polymorphisms in weedy rice populations associated with the change of farming styles: Implications in adaptive mutation and evolution DY Song, Z Wang, ZJ Song, CC Zhou, PH Xu, J Yang, J Yang, BR Lu Journal of systematics and evolution 55 (2), 149-157, 2017 | 5 | 2017 |
RESCOT: restriction enzyme set and combination optimization tools for rNMP capture techniques P Xu, F Storici Theoretical computer science 894, 203-213, 2021 | 3 | 2021 |
RibosePreferenceAnalysis: analyzing the preference of rNMPs embedded in genomic DNA P Xu, F Storici Software Impacts 10, 100149, 2021 | 3 | 2021 |
Enriched zones of embedded ribonucleotides are associated with DNA replication and coding sequences in the human mitochondrial genome P Xu, T Yang, DL Kundnani, M Sun, S Marsili, AL Gombolay, Y Jeon, ... bioRxiv, 2023.04. 05.535745, 2023 | 1 | 2023 |
Light-strand bias and enriched zones of embedded ribonucleotides are associated with DNA replication and transcription in the human-mitochondrial genome P Xu, T Yang, DL Kundnani, M Sun, S Marsili, AL Gombolay, Y Jeon, ... Nucleic Acids Research 52 (3), 1207-1225, 2024 | | 2024 |
DSBplot: Indels in DNA Double-strand Break Repair Experiments T Channagiri, MM Ferrari, Y Jeon, P Xu, F Storici, N Jonoska arXiv preprint arXiv:2312.17590, 2023 | | 2023 |
rNMPID: a database for riboNucleoside Mono-Phosphates In DNA J Yang, M Sun, Z Ran, T Yang, DL Kundnani, F Storici, P Xu bioRxiv, 2023.11. 16.567417, 2023 | | 2023 |
RNA-mediated double-strand break repair in human cells Y Jeon, MM Ferrari, T Channagiri, P Xu, S Balachander, VS Park, ... bioRxiv, 2022.11. 01.514688, 2022 | | 2022 |
RNA-Mediated DNA Double-Strand Break Repair Y Jeon, P Xu, M Ferrari, T Channagiri, N Jonoska, F Storici ENVIRONMENTAL AND MOLECULAR MUTAGENESIS 63, 39-40, 2022 | | 2022 |
Ribonucleotide Incorporation Characteristics in Human Mitochondrial DNA and Relationship to Gene Size P Xu, T Yang, D Kundnani, M Sun, F Storici ENVIRONMENTAL AND MOLECULAR MUTAGENESIS 63, 149-149, 2022 | | 2022 |
Chronic Pm2. 5 Exposure Disrupts Intestinal Barrier Integrity Via Microbial Dysbiosis-Triggered Tlr2/5-Myd88-Nlrp3 Inflammasome Activation R Li, Z RAN, J Yang, L Liu, S Wu, Y An, W Hou, T Cheng, Y Zhang, ... | | |