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Hananeh Aliee
Hananeh Aliee
Sanger Institute, Cambridge, UK
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Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics
C Muus, MD Luecken, G Eraslan, L Sikkema, A Waghray, G Heimberg, ...
Nature Medicine, 1-14, 2021
565*2021
Best practices for single-cell analysis across modalities
L Heumos, AC Schaar, C Lance, A Litinetskaya, F Drost, L Zappia, ...
Nature Reviews Genetics, 1-23, 2023
3062023
AutoGeneS: Automatic gene selection using multi-objective optimization for RNA-seq deconvolution
H Aliee, FJ Theis
Cell Systems 12 (7), 706-715. e4, 2021
722021
A sandbox for prediction and integration of DNA, RNA, and proteins in single cells
MD Luecken, DB Burkhardt, R Cannoodt, C Lance, A Agrawal, H Aliee, ...
NeurIPS 2021 Track Datasets and Benchmarks, 2021
712021
A new time-independent reliability importance measure
E Borgonovo, H Aliee, M Glaß, J Teich
European Journal of Operational Research 254 (2), 427-442, 2016
642016
A fast and accurate fault tree analysis based on stochastic logic implemented on field-programmable gate arrays
H Aliee, HR Zarandi
IEEE Transactions on Reliability 62 (1), 13-22, 2013
582013
Origin and function of activated fibroblast states during zebrafish heart regeneration
B Hu, S Lelek, B Spanjaard, H El-Sammak, MG Simões, J Mintcheva, ...
Nature Genetics, 1-11, 2022
532022
Resilience Articulation Point (RAP): Cross-layer dependability modeling for nanometer system-on-chip resilience
A Herkersdorf, H Aliee, M Engel, M Glaß, C Gimmler-Dumont, J Henkel, ...
Microelectronics Reliability 54 (6-7), 1066-1074, 2014
432014
Determinants of expression of SARS‐CoV‐2 entry related genes in upper and lower airways
H Aliee, F Massip, C Qi, MS de Biase, J van Nijnatten, ETG Kersten, ...
Allergy, 2021
37*2021
Fault tree analysis using stochastic logic: A reliable and high speed computing
H Aliee, HR Zarandi
2011 Proceedings-Annual Reliability and Maintainability Symposium, 1-6, 2011
322011
Integration of single-cell transcriptomes and chromatin landscapes reveals regulatory programs driving pharyngeal organ development
ME Magaletta, M Lobo, EM Kernfeld, H Aliee, JD Huey, TJ Parsons, ...
Nature Communications 13 (1), 1-16, 2022
292022
On the Boolean extension of the Birnbaum importance to non-coherent systems
H Aliee, E Borgonovo, M Glaß, J Teich
Reliability Engineering & System Safety 160, 191-200, 2017
292017
Sfaira accelerates data and model reuse in single cell genomics
DS Fischer, L Dony, M König, A Moeed, L Zappia, S Tritschler, ...
Genome Biology, 2020
272020
TDP-43 condensates and lipid droplets regulate the reactivity of microglia and regeneration after traumatic brain injury
A Zambusi, KT Novoselc, S Hutten, S Kalpazidou, C Koupourtidou, ...
Nature Neuroscience, 1-18, 2022
202022
Automatic success tree-based reliability analysis for the consideration of transient and permanent faults
H Aliee, M Glaß, F Reimann, J Teich
Proceedings of the Conference on Design, Automation and Test in Europe, 1621 …, 2013
192013
Current smoking alters gene expression and DNA methylation in the nasal epithelium of patients with asthma
KD Reddy, A Lan, IM Boudewijn, SNH Rathnayake, GH Koppelman, ...
American Journal of Respiratory Cell and Molecular Biology 65 (4), 366-377, 2021
172021
Beyond Predictions in Neural ODEs: Identification and Interventions
H Aliee, FJ Theis, N Kilbertus
arXiv preprint arXiv:2106.12430, 2021
162021
Causal machine learning for single-cell genomics
A Tejada-Lapuerta, P Bertin, S Bauer, H Aliee*, Y Bengio*, FJ Theis*
arXiv preprint arXiv:2310.14935, 2023
102023
Sparsity in Continuous-Depth Neural Networks
H Aliee, T Richter, M Solonin, I Ibarra, F Theis, N Kilbertus
NeurIPS 2022, 2022
92022
An efficient technique for computing importance measures in automatic design of dependable embedded systems
H Aliee, M Glaß, F Khosravi, J Teich
Proceedings of the 2014 International Conference on Hardware/Software …, 2014
82014
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Articles 1–20