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Jose M Duarte
Jose M Duarte
RCSB PDB, UC San Diego
Verified email at rcsb.org
Title
Cited by
Cited by
Year
Genome sequence of the Brown Norway rat yields insights into mammalian evolution
University of Utah Weiss Robert B. 14 Dunn Diane M. 14, ...
Nature 428 (6982), 493-521, 2004
24792004
RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology …
SK Burley, C Bhikadiya, C Bi, S Bittrich, L Chen, GV Crichlow, CH Christie, ...
Nucleic acids research 49 (D1), D437-D451, 2021
10402021
RCSB Protein Data Bank: biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy
SK Burley, HM Berman, C Bhikadiya, C Bi, L Chen, L Di Costanzo, ...
Nucleic acids research 47 (D1), D464-D474, 2019
10192019
The RCSB protein data bank: integrative view of protein, gene and 3D structural information
PW Rose, A Prlić, A Altunkaya, C Bi, AR Bradley, CH Christie, ...
Nucleic acids research, gkw1000, 2016
9962016
Protein Data Bank: the single global archive for 3D macromolecular structure data
Nucleic acids research 47 (D1), D520-D528, 2019
5812019
Web-based molecular graphics for large complexes
AS Rose, AR Bradley, Y Valasatava, JM Duarte, A Prlić, PW Rose
Proceedings of the 21st international conference on Web3D technology, 185-186, 2016
5772016
RCSB Protein Data Bank: Enabling biomedical research and drug discovery
DS Goodsell, C Zardecki, L Di Costanzo, JM Duarte, BP Hudson, ...
Protein Science 29 (1), 52-65, 2020
2602020
RCSB Protein Data Bank: Sustaining a living digital data resource that enables breakthroughs in scientific research and biomedical education
SK Burley, HM Berman, C Christie, JM Duarte, Z Feng, J Westbrook, ...
Protein Science 27 (1), 316-330, 2018
2412018
Protein interface classification by evolutionary analysis
JM Duarte, A Srebniak, MA Schärer, G Capitani
BMC bioinformatics 13, 1-16, 2012
1522012
CMView: interactive contact map visualization and analysis
C Vehlow, H Stehr, M Winkelmann, JM Duarte, L Petzold, J Dinse, ...
Bioinformatics 27 (11), 1573-1574, 2011
1472011
RCSB Protein Data Bank: architectural advances towards integrated searching and efficient access to macromolecular structure data from the PDB archive
Y Rose, JM Duarte, R Lowe, J Segura, C Bi, C Bhikadiya, L Chen, ...
Journal of molecular biology 433 (11), 166704, 2021
1222021
Optimal contact definition for reconstruction of contact maps
JM Duarte, R Sathyapriya, H Stehr, I Filippis, M Lappe
BMC bioinformatics 11 (1), 1-10, 2010
762010
The structural impact of cancer-associated missense mutations in oncogenes and tumor suppressors
H Stehr, SHJ Jang, JM Duarte, C Wierling, H Lehrach, M Lappe, ...
Molecular cancer 10 (1), 1-10, 2011
702011
Automated evaluation of quaternary structures from protein crystals
S Bliven, A Lafita, A Parker, G Capitani, JM Duarte
PLoS computational biology 14 (4), e1006104, 2018
692018
A PDB-wide, evolution-based assessment of protein-protein interfaces
K Baskaran, JM Duarte, N Biyani, S Bliven, G Capitani
BMC structural biology 14 (1), 1-11, 2014
622014
Mapping genetic variations to three-dimensional protein structures to enhance variant interpretation: a proposed framework
G Glusman, PW Rose, A Prlić, J Dougherty, JM Duarte, AS Hoffman, ...
Genome medicine 9 (1), 1-10, 2017
582017
Defining an essence of structure determining residue contacts in proteins
R Sathyapriya, JM Duarte, H Stehr, I Filippis, M Lappe
PLoS computational biology 5 (12), e1000584, 2009
562009
Assessment of protein assembly prediction in CASP12
A Lafita, S Bliven, A Kryshtafovych, M Bertoni, B Monastyrskyy, JM Duarte, ...
Proteins: Structure, Function, and Bioinformatics 86, 247-256, 2018
542018
MMTF—an efficient file format for the transmission, visualization, and analysis of macromolecular structures
AR Bradley, AS Rose, A Pavelka, Y Valasatava, JM Duarte, A Prlić, ...
PLoS computational biology 13 (6), e1005575, 2017
502017
BioJava 5: A community driven open-source bioinformatics library
A Lafita, S Bliven, A Prlić, D Guzenko, PW Rose, A Bradley, P Pavan, ...
PLoS computational biology 15 (2), e1006791, 2019
422019
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