Thomas Rattei
Thomas Rattei
Professor for Computational Biology, University of Vienna
Verified email at univie.ac.at
Title
Cited by
Cited by
Year
Genome sequencing and analysis of the model grass Brachypodium distachyon
International Brachypodium Initiative
Nature 463 (7282), 763, 2010
15012010
eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences
J Huerta-Cepas, D Szklarczyk, K Forslund, H Cook, D Heller, MC Walter, ...
Nucleic acids research 44 (D1), D286-D293, 2016
11092016
Deciphering the evolution and metabolism of an anammox bacterium from a community genome
M Strous, E Pelletier, S Mangenot, T Rattei, A Lehner, MW Taylor, M Horn, ...
Nature 440 (7085), 790-794, 2006
10382006
Complete nitrification by Nitrospira bacteria
H Daims, EV Lebedeva, P Pjevac, P Han, C Herbold, M Albertsen, ...
Nature 528 (7583), 504-509, 2015
10042015
The dynamic genome of Hydra
JA Chapman, EF Kirkness, O Simakov, SE Hampson, T Mitros, ...
Nature 464 (7288), 592-596, 2010
6792010
Gepard: a rapid and sensitive tool for creating dotplots on genome scale
J Krumsiek, R Arnold, T Rattei
Bioinformatics 23 (8), 1026-1028, 2007
5202007
A Nitrospira metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteria
S Lücker, M Wagner, F Maixner, E Pelletier, H Koch, B Vacherie, T Rattei, ...
Proceedings of the National Academy of Sciences 107 (30), 13479-13484, 2010
5022010
Distinct gene set in two different lineages of ammonia-oxidizing archaea supports the phylum Thaumarchaeota
A Spang, R Hatzenpichler, C Brochier-Armanet, T Rattei, P Tischler, ...
Trends in microbiology 18 (8), 331-340, 2010
4992010
eggNOG v3. 0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges
S Powell, D Szklarczyk, K Trachana, A Roth, M Kuhn, J Muller, R Arnold, ...
Nucleic acids research 40 (D1), D284-D289, 2012
4882012
Illuminating the evolutionary history of chlamydiae
M Horn, A Collingro, S Schmitz-Esser, CL Beier, U Purkhold, B Fartmann, ...
Science 304 (5671), 728-730, 2004
4762004
amoA‐based consensus phylogeny of ammonia‐oxidizing archaea and deep sequencing of amoA genes from soils of four different geographic regions
M Pester, T Rattei, S Flechl, A Gröngröft, A Richter, J Overmann, ...
Environmental Microbiology 14 (2), 525-539, 2012
4222012
Deep sequencing reveals exceptional diversity and modes of transmission for bacterial sponge symbionts
NS Webster, MW Taylor, F Behnam, S Lücker, T Rattei, S Whalan, M Horn, ...
Environmental Microbiology 12 (8), 2070-2082, 2010
4042010
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
RM Bowers, NC Kyrpides, R Stepanauskas, M Harmon-Smith, D Doud, ...
Nature biotechnology 35 (8), 725-731, 2017
3972017
eggNOG v4. 0: nested orthology inference across 3686 organisms
S Powell, K Forslund, D Szklarczyk, K Trachana, A Roth, J Huerta-Cepas, ...
Nucleic acids research 42 (D1), D231-D239, 2014
3962014
MIPS: analysis and annotation of proteins from whole genomes in 2005
HW Mewes, D Frishman, KFX Mayer, M Münsterkötter, O Noubibou, ...
Nucleic acids research 34 (suppl_1), D169-D172, 2006
3602006
Critical assessment of metagenome interpretation—a benchmark of metagenomics software
A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Dröge, ...
Nature methods 14 (11), 1063-1071, 2017
3112017
Sequence-based prediction of type III secreted proteins
R Arnold, S Brandmaier, F Kleine, P Tischler, E Heinz, S Behrens, ...
PLoS Pathog 5 (4), e1000376, 2009
2732009
Genome of Acanthamoeba castellanii highlights extensive lateral gene transfer and early evolution of tyrosine kinase signaling
M Clarke, AJ Lohan, B Liu, I Lagkouvardos, S Roy, N Zafar, C Bertelli, ...
Genome biology 14 (2), 1-15, 2013
2372013
The genome of the ammonia‐oxidizing Candidatus Nitrososphaera gargensis: insights into metabolic versatility and environmental adaptations
A Spang, A Poehlein, P Offre, S Zumbrägel, S Haider, N Rychlik, B Nowka, ...
Environmental microbiology 14 (12), 3122-3145, 2012
2302012
probeCheck–a central resource for evaluating oligonucleotide probe coverage and specificity
A Loy, R Arnold, P Tischler, T Rattei, M Wagner, M Horn
Environmental Microbiology 10 (10), 2894-2898, 2008
2002008
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