Jun Chen
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Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes
GD Wu, J Chen, C Hoffmann, K Bittinger, YY Chen, SA Keilbaugh, ...
Science 334 (6052), 105-108, 2011
Intestinal microbiota metabolism of L-carnitine, a nutrient in red meat, promotes atherosclerosis
RA Koeth, Z Wang, BS Levison, JA Buffa, BT Sheehy, EB Britt, X Fu, Y Wu, ...
Nature medicine 19 (5), 576-585, 2013
The human gut virome: Inter-individual variation and dynamic response to diet
S Minot, R Sinha, J Chen, H Li, SA Keilbaugh, GD Wu, JD Lewis, ...
Genome research 21 (10), 1616-1625, 2011
Archaea and Fungi of the Human Gut Microbiome: Correlations with Diet and Bacterial Residents
C Hoffmann, S Dollive, S Grunberg, J Chen, H Li, GD Wu, JD Lewis, ...
PLOS ONE 8 (6), e66019, 2013
Associating microbiome composition with environmental covariates using generalized UniFrac distances
J Chen, K Bittinger, ES Charlson, C Hoffmann, J Lewis, GD Wu, ...
Bioinformatics 28 (16), 2106-2113, 2012
Prediction of linear B-cell epitopes using amino acid pair antigenicity scale
J Chen, H Liu, J Yang, KC Chou
Amino Acids 33 (3), 423-428, 2007
Correlation between intraluminal oxygen gradient and radial partitioning of intestinal microbiota
L Albenberg, TV Esipova, CP Judge, K Bittinger, J Chen, A Laughlin, ...
Gastroenterology 147 (5), 1055-1063. e8, 2014
Multiple sclerosis patients have a distinct gut microbiota compared to healthy controls
J Chen, N Chia, KR Kalari, JZ Yao, M Novotna, MMP Soldan, DH Luckey, ...
Scientific Reports 6, 28484, 2016
Sampling and pyrosequencing methods for characterizing bacterial communities in the human gut using 16S sequence tags
G Wu, J Lewis, C Hoffmann, YY Chen, R Knight, K Bittinger, J Hwang, ...
BMC microbiology 10 (1), 206, 2010
Disordered microbial communities in the upper respiratory tract of cigarette smokers
ES Charlson, J Chen, R Custers-Allen, K Bittinger, H Li, R Sinha, J Hwang, ...
PloS one 5 (12), e15216, 2010
An expansion of rare lineage intestinal microbes characterizes rheumatoid arthritis
J Chen, K Wright, JM Davis, P Jeraldo, EV Marietta, J Murray, H Nelson, ...
Genome medicine 8 (1), 43, 2016
The Microbiome of Aseptically Collected Human Breast Tissue in Benign and Malignant Disease
TJ Hieken, J Chen, TL Hoskin, M Walther-Antonio, S Johnson, S Ramaker, ...
Scientific Reports 6, 30751, 2016
Testing in Microbiome-Profiling Studies with MiRKAT, the Microbiome Regression-Based Kernel Association Test
N Zhao, J Chen, IM Carroll, T Ringel-Kulka, MP Epstein, H Zhou, JJ Zhou, ...
The American Journal of Human Genetics 96 (5), 797-807, 2015
Variable selection for sparse Dirichlet-multinomial regression with an application to microbiome data analysis
J Chen, H Li
The Annals of Applied Statistics 7 (1), 418-442, 2013
Relationship Between Microbiota of the Colonic Mucosa vs Feces and Symptoms, Colonic Transit, and Methane Production in Female Patients With Chronic Constipation
G Parthasarathy, J Chen, X Chen, N Chia, HM O'Connor, PG Wolf, ...
Gastroenterology 150 (2), 367-379, 2016
Assessing Bacterial Populations in the Lung by Replicate Analysis of Samples from the Upper and Lower Respiratory Tracts
ES Charlson, K Bittinger, J Chen, JM Diamond, H Li, RG Collman, ...
PloS one 7 (9), e42786, 2012
Collecting Fecal Samples for Microbiome Analyses in Epidemiology Studies
R Sinha, J Chen, A Amir, E Vogtmann, KS Inman, R Flores-Munguia, ...
Cancer Epidemiology Biomarkers & Prevention 25, 407-416, 2016
Structure-constrained sparse canonical correlation analysis with an application to microbiome data analysis
J Chen, FD Bushman, JD Lewis, GD Wu, H Li
Biostatistics 14 (2), 244-258, 2013
Potential contribution of the uterine microbiome in the development of endometrial cancer
MRS Walther-António, J Chen, F Multinu, A Hokenstad, TJ Distad, ...
Genome Medicine 8 (1), 122, 2016
A logistic normal multinomial regression model for microbiome compositional data analysis
F Xia, J Chen, WK Fung, H Li
Biometrics 69 (4), 1053-1063, 2013
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