Follow
Ying Shen
Ying Shen
Verified email at stanford.edu
Title
Cited by
Cited by
Year
A long noncoding RNA lincRNA-EPS acts as a transcriptional brake to restrain inflammation
MK Atianand, W Hu, AT Satpathy, Y Shen, EP Ricci, ...
Cell 165 (7), 1672-1685, 2016
4242016
Transcript-RNA-templated DNA recombination and repair
H Keskin, Y Shen, F Huang, M Patel, T Yang, K Ashley, AV Mazin, ...
Nature 515 (7527), 436-439, 2014
3742014
irCLIP platform for efficient characterization of protein–RNA interactions
BJ Zarnegar, RA Flynn, Y Shen, BT Do, HY Chang, PA Khavari
Nature methods 13 (6), 489-492, 2016
2462016
An inducible long noncoding RNA amplifies DNA damage signaling
AM Schmitt, JT Garcia, T Hung, RA Flynn, Y Shen, K Qu, AY Payumo, ...
Nature genetics 48 (11), 1370-1376, 2016
2402016
ATAC-see reveals the accessible genome by transposase-mediated imaging and sequencing
X Chen, Y Shen, W Draper, JD Buenrostro, U Litzenburger, SW Cho, ...
Nature methods 13 (12), 1013-1020, 2016
2222016
PathoScope 2.0: a complete computational framework for strain identification in environmental or clinical sequencing samples
C Hong, S Manimaran, Y Shen, JF Perez-Rogers, AL Byrd, ...
Microbiome 2, 1-15, 2014
2082014
Leukemia-associated cohesin mutants dominantly enforce stem cell programs and impair human hematopoietic progenitor differentiation
C Mazumdar, Y Shen, S Xavy, F Zhao, A Reinisch, R Li, MR Corces, ...
Cell stem cell 17 (6), 675-688, 2015
2042015
Single-cell epigenomic variability reveals functional cancer heterogeneity
UM Litzenburger, JD Buenrostro, B Wu, Y Shen, NC Sheffield, A Kathiria, ...
Genome biology 18, 1-12, 2017
1102017
RNA-driven genetic changes in bacteria and in human cells
Y Shen, P Nandi, MB Taylor, S Stuckey, HP Bhadsavle, B Weiss, F Storici
Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis 717 (1 …, 2011
802011
Integrating microbial and host transcriptomics to characterize asthma-associated microbial communities
E Castro-Nallar, Y Shen, RJ Freishtat, M Pérez-Losada, S Manimaran, ...
BMC medical genomics 8, 1-9, 2015
702015
Hnrnph1 Is A Quantitative Trait Gene for Methamphetamine Sensitivity
N Yazdani, CC Parker, Y Shen, ER Reed, MA Guido, LA Kole, ...
PLoS genetics 11 (12), e1005713, 2015
612015
Mispaired rNMPs in DNA are mutagenic and are targets of mismatch repair and RNases H
Y Shen, KD Koh, B Weiss, F Storici
Nature structural & molecular biology 19 (1), 98-104, 2012
592012
ASSIGN: context-specific genomic profiling of multiple heterogeneous biological pathways
Y Shen, M Rahman, SR Piccolo, D Gusenleitner, NN El-Chaar, L Cheng, ...
Bioinformatics 31 (11), 1745-1753, 2015
412015
Integrating metagenomics and host gene expression to characterize asthma-associated microbial communities
E Castro-Nallar, Y Shen, RJ Freishtat, M Pérez-Losada, S Manimaran, ...
BMC Medical Genomics 8 (50), 26277095, 2015
92015
Detection of RNA-templated double-strand break repair in yeast
Y Shen, F Storici
DNA Recombination: Methods and Protocols, 193-204, 2011
72011
Generation of RNA/DNA Hybrids in Genomic DNA by Transformation using RNA-containing Oligonucleotides
Y Shen, F Storici
JoVE (Journal of Visualized Experiments), e2152, 2010
62010
Striatal transcriptome analysis of a congenic mouse line (chromosome 11: 50–60Mb) exhibiting reduced methamphetamine sensitivity
N Yazdani, Y Shen, WE Johnson, CD Bryant
Genomics data 8, 77-80, 2016
52016
397 Uncovering causative, noncoding genetic variants in cutaneous diseases
G Wozniak, Y Shen, A Rubin, P Neela, P Khavari
Journal of Investigative Dermatology 139 (5), S68, 2019
2019
PathoScope: a multi-omic approach to characterize microbiomes and identify pathogens
E Castro-Nallar, Y Shen, RJ Freishtat, M Pérez-Losada, S Manimaran, ...
The system can't perform the operation now. Try again later.
Articles 1–19