James T. Morton
James T. Morton
Simons Foundation
Verified email at flatironinstitute.org
Title
Cited by
Cited by
Year
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology 37 (8), 852-857, 2019
22962019
A communal catalogue reveals Earth’s multiscale microbial diversity
LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ...
Nature 551 (7681), 457-463, 2017
9952017
Best practices for analysing microbiomes
R Knight, A Vrbanac, BC Taylor, A Aksenov, C Callewaert, J Debelius, ...
Nature Reviews Microbiology 16 (7), 410-422, 2018
5802018
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ...
PeerJ Preprints, 2018
5582018
Deblur rapidly resolves single-nucleotide community sequence patterns
A Amir, D McDonald, JA Navas-Molina, E Kopylova, JT Morton, ZZ Xu, ...
MSystems 2 (2), 2017
4822017
Microbiome-wide association studies link dynamic microbial consortia to disease
JA Gilbert, RA Quinn, J Debelius, ZZ Xu, J Morton, N Garg, JK Jansson, ...
Nature 535 (7610), 94-103, 2016
4522016
Parkinson's disease and Parkinson's disease medications have distinct signatures of the gut microbiome
EM Hill‐Burns, JW Debelius, JT Morton, WT Wissemann, MR Lewis, ...
Movement Disorders 32 (5), 739-749, 2017
3472017
American gut: an open platform for citizen science microbiome research
D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ...
Msystems 3 (3), 2018
2472018
The ecology of microscopic life in household dust
A Barberán, RR Dunn, BJ Reich, K Pacifici, EB Laber, HL Menninger, ...
Proceedings of the Royal Society B: Biological Sciences 282 (1814), 20151139, 2015
1942015
Deblur rapidly resolves single-nucleotide community sequence patterns. mSystems 2: e00191-16
A Amir, D McDonald, JA Navas-Molina, E Kopylova, JT Morton, Z Zech Xu, ...
1532017
Immunization with a heat-killed preparation of the environmental bacterium Mycobacterium vaccae promotes stress resilience in mice
SO Reber, PH Siebler, NC Donner, JT Morton, DG Smith, JM Kopelman, ...
Proceedings of the National Academy of Sciences 113 (22), E3130-E3139, 2016
1442016
Establishing microbial composition measurement standards with reference frames
JT Morton, C Marotz, A Washburne, J Silverman, LS Zaramela, A Edlund, ...
Nature communications 10 (1), 1-11, 2019
1402019
Balance trees reveal microbial niche differentiation
JT Morton, J Sanders, RA Quinn, D McDonald, A Gonzalez, ...
MSystems 2 (1), 2017
1352017
Impact of dietary resistant starch on the human gut microbiome, metaproteome, and metabolome
TV Maier, M Lucio, LH Lee, NC VerBerkmoes, CJ Brislawn, J Bernhardt, ...
MBio 8 (5), 2017
1252017
The microbiome in posttraumatic stress disorder and trauma-exposed controls: an exploratory study
SMJ Hemmings, S Malan-Muller, LL van den Heuvel, BA Demmitt, ...
Psychosomatic medicine 79 (8), 936, 2017
1122017
Evolutionary trends in host physiology outweigh dietary niche in structuring primate gut microbiomes
KR Amato, JG Sanders, SJ Song, M Nute, JL Metcalf, LR Thompson, ...
The ISME journal 13 (3), 576-587, 2019
982019
Evaluating the impact of domestication and captivity on the horse gut microbiome
JL Metcalf, SJ Song, JT Morton, S Weiss, A Seguin-Orlando, F Joly, C Feh, ...
Scientific reports 7 (1), 1-9, 2017
622017
Rail-RNA: scalable analysis of RNA-seq splicing and coverage
A Nellore, L Collado-Torres, AE Jaffe, J Alquicira-Hernández, C Wilks, ...
Bioinformatics 33 (24), 4033-4040, 2017
582017
Learning representations of microbe–metabolite interactions
JT Morton, AA Aksenov, LF Nothias, JR Foulds, RA Quinn, MH Badri, ...
Nature methods 16 (12), 1306-1314, 2019
542019
A novel sparse compositional technique reveals microbial perturbations
C Martino, JT Morton, CA Marotz, LR Thompson, A Tripathi, R Knight, ...
MSystems 4 (1), 2019
532019
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Articles 1–20