Leonid Chindelevitch
Title
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Health benefits, costs, and cost-effectiveness of earlier eligibility for adult antiretroviral therapy and expanded treatment coverage: a combined analysis of 12 mathematical†…
JW Eaton, NA Menzies, J Stover, V Cambiano, L Chindelevitch, A Cori, ...
The Lancet Global Health 2 (1), e23-e34, 2014
1982014
A standardised method for interpreting the association between mutations and phenotypic drug resistance in Mycobacterium tuberculosis
P Miotto, B Tessema, E Tagliani, L Chindelevitch, AM Starks, C Emerson, ...
European Respiratory Journal 50 (6), 2017
1762017
Causal reasoning on biological networks: interpreting transcriptional changes
L Chindelevitch, D Ziemek, A Enayetallah, R Randhawa, B Sidders, ...
Bioinformatics 28 (8), 1114-1121, 2012
1092012
Local optimization for global alignment of protein interaction networks
L Chindelevitch, CS Liao, B Berger
Biocomputing 2010, 123-132, 2010
652010
Optimizing a global alignment of protein interaction networks
L Chindelevitch, CY Ma, CS Liao, B Berger
Bioinformatics 29 (21), 2765-2773, 2013
642013
An exact arithmetic toolbox for a consistent and reproducible structural analysis of metabolic network models
L Chindelevitch, J Trigg, A Regev, B Berger
Nature communications 5 (1), 1-9, 2014
432014
The potential effects of changing HIV treatment policy on tuberculosis outcomes in South Africa: results from three tuberculosis-HIV transmission models
C Pretorius, NA Menzies, L Chindelevitch, T Cohen, A Cori, JW Eaton, ...
Aids 28, S25-S34, 2014
422014
MetaMerge: scaling up genome-scale metabolic reconstructions with application to Mycobacterium tuberculosis
L Chindelevitch, S Stanley, D Hung, A Regev, B Berger
Genome biology 13 (1), r6, 2012
352012
Integrating standardized whole genome sequence analysis with a global Mycobacterium tuberculosis antibiotic resistance knowledgebase
M Ezewudo, A Borens, Ń Chiner-Oms, P Miotto, L Chindelevitch, ...
Scientific reports 8 (1), 1-10, 2018
332018
Inverting the Viterbi algorithm: an abstract framework for structure design
M Schnall-Levin, L Chindelevitch, B Berger
Proceedings of the 25th international conference on Machine learning, 904-911, 2008
332008
On the inference of parsimonious indel evolutionary scenarios
L Chindelevitch, Z Li, E Blais, M Blanchette
Journal of bioinformatics and computational biology 4 (03), 721-744, 2006
302006
Within-Host Heterogeneity of Mycobacterium tuberculosis Infection Is Associated With Poor Early Treatment Response: A Prospective Cohort Study
T Cohen, L Chindelevitch, R Misra, ME Kempner, J Galea, P Moodley, ...
The Journal of infectious diseases 213 (11), 1796-1799, 2016
282016
MentaLiST–A fast MLST caller for large MLST schemes
P Feijao, HT Yao, D Fornika, J Gardy, W Hsiao, C Chauve, ...
Microbial genomics 4 (2), 2018
222018
Assessing statistical significance in causal graphs
L Chindelevitch, PR Loh, A Enayetallah, B Berger, D Ziemek
BMC bioinformatics 13 (1), 35, 2012
182012
The effectiveness and perceived burden of nonpharmaceutical interventions against COVID-19 transmission: a modelling study with 41 countries
JM Brauner, M Sharma, S Mindermann, AB Stephenson, T Gavenčiak, ...
medRxiv, 2020
152020
ClassTR: Classifying Within-Host Heterogeneity Based on Tandem Repeats with Application to Mycobacterium tuberculosis Infections
L Chindelevitch, C Colijn, P Moodley, D Wilson, T Cohen
PLoS computational biology 12 (2), e1004475, 2016
152016
Evaluating the potential impact of enhancing HIV treatment and tuberculosis control programmes on the burden of tuberculosis
L Chindelevitch, NA Menzies, C Pretorius, J Stover, JA Salomon, T Cohen
Journal of The Royal Society Interface 12 (106), 20150146, 2015
152015
Relatedness of the incidence decay with exponential adjustment (IDEA) model,“Farr's law” and SIR compartmental difference equation models
M Santillana, A Tuite, T Nasserie, P Fine, D Champredon, L Chindelevitch, ...
Infectious disease modelling 3, 1-12, 2018
132018
How should HIV programmes respond to evidence for the benefits of earlier treatment initiation? A combined analysis of twelve mathematical models
JW Eaton, NA Menzies, J Stover, V Cambiano, L Chindelevitch, A Cori, ...
World Health Organization, 2013
122013
The integrated rapid infectious disease analysis (IRIDA) platform
TC Matthews, FR Bristow, EJ Griffiths, A Petkau, J Adam, D Dooley, ...
bioRxiv, 381830, 2018
82018
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Articles 1–20