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Julian Echave
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Potential optimized discrete variable representation
J Echave, DC Clary
Chemical physics letters 190 (3-4), 225-230, 1992
6111992
Causes of evolutionary rate variation among protein sites
J Echave, SJ Spielman, CO Wilke
Nature Reviews Genetics 17 (2), 109-121, 2016
2162016
The interface of protein structure, protein biophysics, and molecular evolution
DA Liberles, SA Teichmann, I Bahar, U Bastolla, J Bloom, ...
Protein Science 21 (6), 769-785, 2012
1852012
Gamma carbonic anhydrases in plant mitochondria
G Parisi, M Perales, M Fornasari, A Colaneri, N Schain, D Casati, ...
Plant molecular biology 55 (2), 193-207, 2004
1392004
Quantum theory of planar four‐atom reactions
J Echave, DC Clary
The Journal of chemical physics 100 (1), 402-422, 1994
1221994
Measuring and comparing structural fluctuation patterns in large protein datasets
E Fuglebakk, J Echave, N Reuter
Bioinformatics 28 (19), 2431-2440, 2012
1072012
Quantum theory of four-atom reactions using arrangement channel hyperspherical coordinates: Formulation and application to
SK Pogrebnya, J Echave, DC Clary
The Journal of chemical physics 107 (21), 8975-8984, 1997
1031997
Evolutionary conservation of protein vibrational dynamics
S Maguid, S Fernandez-Alberti, J Echave
Gene 422 (1-2), 7-13, 2008
982008
Structural constraints and emergence of sequence patterns in protein evolution
G Parisi, J Echave
Molecular Biology and Evolution 18 (5), 750-756, 2001
942001
Delay model of the circadian pacemaker
MA Lema, DA Golombek, J Echave
Journal of theoretical biology 204 (4), 565-573, 2000
922000
Functional sites induce long-range evolutionary constraints in enzymes
BR Jack, AG Meyer, J Echave, CO Wilke
PLoS Biology 14 (5), e1002452, 2016
822016
Quantum scattering and quasi-classical trajectory calculations for the H 2+ OH⇌ H 2 O+ H reaction on a new potential surface
SK Pogrebnya, J Palma, DC Clary, J Echave
Physical Chemistry Chemical Physics 2 (4), 693-700, 2000
812000
Evolutionary conservation of protein backbone flexibility
S Maguid, S Fernández-Alberti, G Parisi, J Echave
Journal of molecular evolution 63 (4), 448-457, 2006
802006
Exploring the common dynamics of homologous proteins. Application to the globin family
S Maguid, S Fernandez-Alberti, L Ferrelli, J Echave
Biophysical journal 89 (1), 3-13, 2005
792005
Biophysical models of protein evolution: understanding the patterns of evolutionary sequence divergence
J Echave, CO Wilke
Annual review of biophysics 46, 85, 2017
782017
Gamma carbonic anhydrase like complex interact with plant mitochondrial complex I
M Perales, G Parisi, MS Fornasari, A Colaneri, F Villarreal, ...
Plant molecular biology 56 (6), 947-957, 2004
712004
Site-specific structural constraints on protein sequence evolutionary divergence: local packing density versus solvent exposure
SW Yeh, JW Liu, SH Yu, CH Shih, JK Hwang, J Echave
Molecular Biology and Evolution 31 (1), 135-139, 2014
692014
A mechanistic stress model of protein evolution accounts for site-specific evolutionary rates and their relationship with packing density and flexibility
TT Huang, ML del Valle Marcos, JK Hwang, J Echave
BMC evolutionary biology 14 (1), 1-10, 2014
552014
Rate constants for the CH4+ H→ CH3+ H2 reaction calculated with a generalized reduced-dimensionality method
J Palma, J Echave, DC Clary
The Journal of Physical Chemistry A 106 (36), 8256-8260, 2002
492002
Site-specific amino acid replacement matrices from structurally constrained protein evolution simulations
MS Fornasari, G Parisi, J Echave
Molecular biology and evolution 19 (3), 352-356, 2002
492002
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