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Aniket Magarkar
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Cholesterol level affects surface charge of lipid membranes in saline solution
A Magarkar, V Dhawan, P Kallinteri, T Viitala, M Elmowafy, T Róg, ...
Scientific reports 4 (1), 5005, 2014
2112014
Rational design of liposomal drug delivery systems, a review: Combined experimental and computational studies of lipid membranes, liposomes and their PEGylation
A Bunker, A Magarkar, T Viitala
Biochimica et Biophysica Acta (BBA)-Biomembranes 1858 (10), 2334-2352, 2016
1992016
Arginine-rich cell-penetrating peptides induce membrane multilamellarity and subsequently enter via formation of a fusion pore
C Allolio, A Magarkar, P Jurkiewicz, K Baxová, M Javanainen, PE Mason, ...
Proceedings of the National Academy of Sciences 115 (47), 11923-11928, 2018
1892018
Oncolytic adenoviruses coated with MHC-I tumor epitopes increase the antitumor immunity and efficacy against melanoma
C Capasso, M Hirvinen, M Garofalo, D Romaniuk, L Kuryk, T Sarvela, ...
Oncoimmunology 5 (4), e1105429, 2016
962016
Influence of doxorubicin on model cell membrane properties: insights from in vitro and in silico studies
AC Alves, A Magarkar, M Horta, JLFC Lima, A Bunker, C Nunes, S Reis
Scientific reports 7 (1), 6343, 2017
892017
Analysis of cause of failure of new targeting peptide in PEGylated liposome: molecular modeling as rational design tool for nanomedicine
J Lehtinen, A Magarkar, M Stepniewski, S Hakola, M Bergman, T Róg, ...
European journal of pharmaceutical sciences 46 (3), 121-130, 2012
762012
Molecular dynamics simulation of PEGylated bilayer interacting with salt ions: a model of the liposome surface in the bloodstream
A Magarkar, E Karakas, M Stepniewski, T Rog, A Bunker
The Journal of Physical Chemistry B 116 (14), 4212-4219, 2012
742012
Two cations, two mechanisms: interactions of sodium and calcium with zwitterionic lipid membranes
M Javanainen, A Melcrová, A Magarkar, P Jurkiewicz, M Hof, P Jungwirth, ...
Chemical Communications 53 (39), 5380-5383, 2017
542017
In vitro and in vivo behavior of liposomes decorated with PEGs with different chemical features
F Mastrotto, C Brazzale, F Bellato, S De Martin, G Grange, ...
Molecular pharmaceutics 17 (2), 472-487, 2019
452019
Hydrophobin film structure for HFBI and HFBII and mechanism for accelerated film formation
A Magarkar, N Mele, N Abdel-Rahman, S Butcher, M Torkkeli, R Serimaa, ...
PLoS computational biology 10 (7), e1003745, 2014
362014
Increased binding of calcium ions at positively curved phospholipid membranes
A Magarkar, P Jurkiewicz, C Allolio, M Hof, P Jungwirth
The Journal of Physical Chemistry Letters 8 (2), 518-523, 2017
322017
Design of cholesterol arabinogalactan anchored liposomes for asialoglycoprotein receptor mediated targeting to hepatocellular carcinoma: In silico modeling, in vitro and in …
P Pathak, V Dhawan, A Magarkar, R Danne, S Govindarajan, S Ghosh, ...
International Journal of Pharmaceutics 509 (1-2), 149-158, 2016
322016
Molecular dynamics simulation of PEGylated membranes with cholesterol: building toward the DOXIL formulation
A Magarkar, T Rog, A Bunker
The Journal of Physical Chemistry C 118 (28), 15541-15549, 2014
322014
A novel in silico framework to improve MHC-I epitopes and break the tolerance to melanoma
C Capasso, A Magarkar, V Cervera-Carrascon, M Fusciello, S Feola, ...
Oncoimmunology 6 (9), e1319028, 2017
302017
Membrane bound COMT isoform is an interfacial enzyme: general mechanism and new drug design paradigm
A Magarkar, P Parkkila, T Viitala, T Lajunen, E Mobarak, G Licari, ...
Chemical communications 54 (28), 3440-3443, 2018
242018
Molecular dynamics simulation of inverse-phosphocholine lipids
A Magarkar, T Rog, A Bunker
The Journal of Physical Chemistry C 118 (33), 19444-19449, 2014
222014
A computational study suggests that replacing PEG with PMOZ may increase exposure of hydrophobic targeting moiety
A Magarkar, T Rog, A Bunker
European Journal of Pharmaceutical Sciences 103, 128-135, 2017
212017
Properties of the Membrane Binding Component of Catechol-O-methyltransferase Revealed by Atomistic Molecular Dynamics Simulations
A Orłowski, JF St-Pierre, A Magarkar, A Bunker, M Pasenkiewicz-Gierula, ...
The Journal of Physical Chemistry B 115 (46), 13541-13550, 2011
212011
Evaluating the use of absolute binding free energy in the fragment optimisation process
I Alibay, A Magarkar, D Seeliger, PC Biggin
Communications Chemistry 5 (1), 105, 2022
182022
Fragment binding pose predictions using unbiased simulations and Markov-state models
SM Linker, A Magarkar, J Köfinger, G Hummer, D Seeliger
Journal of Chemical Theory and Computation 15 (9), 4974-4981, 2019
182019
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