| Extensive unexplored human microbiome diversity revealed by over 150,000 genomes from metagenomes spanning age, geography, and lifestyle E Pasolli, F Asnicar, S Manara, M Zolfo, N Karcher, F Armanini, F Beghini, ... Cell 176 (3), 649-662. e20, 2019 | 1356 | 2019 |
| Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation AM Thomas, P Manghi, F Asnicar, E Pasolli, F Armanini, M Zolfo, ... Nature medicine 25 (4), 667-678, 2019 | 786 | 2019 |
| The Prevotella copri complex comprises four distinct clades underrepresented in westernized populations A Tett, KD Huang, F Asnicar, H Fehlner-Peach, E Pasolli, N Karcher, ... Cell host & microbe 26 (5), 666-679. e7, 2019 | 378 | 2019 |
| Microbiome meta-analysis and cross-disease comparison enabled by the SIAMCAT machine learning toolbox J Wirbel, K Zych, M Essex, N Karcher, E Kartal, G Salazar, P Bork, ... Genome biology 22 (1), 93, 2021 | 175 | 2021 |
| Variability of strain engraftment and predictability of microbiome composition after fecal microbiota transplantation across different diseases G Ianiro, M Punčochář, N Karcher, S Porcari, F Armanini, F Asnicar, ... Nature Medicine 28 (9), 1913-1923, 2022 | 173 | 2022 |
| Genomic diversity and ecology of human-associated Akkermansia species in the gut microbiome revealed by extensive metagenomic assembly N Karcher, E Nigro, M Punčochář, A Blanco-Míguez, M Ciciani, P Manghi, ... Genome biology 22 (1), 209, 2021 | 102 | 2021 |
| Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations N Karcher, E Pasolli, F Asnicar, KD Huang, A Tett, S Manara, F Armanini, ... Genome biology 21, 1-27, 2020 | 99 | 2020 |
| Bacterial retrons encode phage-defending tripartite toxin–antitoxin systems J Bobonis, K Mitosch, A Mateus, N Karcher, G Kritikos, J Selkrig, M Zietek, ... Nature 609 (7925), 144-150, 2022 | 91 | 2022 |
| Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species S Manara, F Asnicar, F Beghini, D Bazzani, F Cumbo, M Zolfo, E Nigro, ... Genome biology 20, 1-16, 2019 | 63 | 2019 |
| Cultivation-independent genomes greatly expand taxonomic-profiling capabilities of mOTUs across various environments HJ Ruscheweyh, A Milanese, L Paoli, N Karcher, Q Clayssen, MI Keller, ... Microbiome 10 (1), 212, 2022 | 53 | 2022 |
| Sulfoquinovose is a select nutrient of prominent bacteria and a source of hydrogen sulfide in the human gut BT Hanson, K Dimitri Kits, J Löffler, AG Burrichter, A Fiedler, K Denger, ... The ISME journal 15 (9), 2779-2791, 2021 | 50 | 2021 |
| proGenomes3: approaching one million accurately and consistently annotated high-quality prokaryotic genomes A Fullam, I Letunic, TSB Schmidt, QR Ducarmon, N Karcher, S Khedkar, ... Nucleic acids research 51 (D1), D760-D766, 2023 | 27 | 2023 |
| The gut microbiome in solid organ transplantation M Baghai Arassi, G Zeller, N Karcher, M Zimmermann, B Toenshoff Pediatric Transplantation 24 (7), e13866, 2020 | 26 | 2020 |
| SIAMCAT: user-friendly and versatile machine learning workflows for statistically rigorous microbiome analyses J Wirbel, K Zych, M Essex, N Karcher, E Kartal, G Salazar, P Bork, ... bioRxiv, 931808, 2020 | 12 | 2020 |
| Reference genome-independent taxonomic profiling of microbiomes with mOTUs3 HJ Ruscheweyh, A Milanese, L Paoli, N Karcher, Q Clayssen, MI Metzger, ... bioRxiv, 2021.04. 20.440600, 2021 | 5 | 2021 |
| Large-scale computational analyses of gut microbial CAZyme repertoires enabled by Cayman QR Ducarmon, N Karcher, HLP Tytgat, O Delannoy-Bruno, S Pekel, ... bioRxiv, 2024.01. 08.574624, 2024 | 1 | 2024 |
| Unraveling interindividual differences and functional consequences of gut microbial metabolism of immunosuppressants M Baghai Arassi, N Karcher, E Mastrorilli, M Gross, A Brauer-Nikonow, ... bioRxiv, 2024.03. 28.586928, 2024 | | 2024 |
| Unraveling interindividual differences and functional consequences of gut microbial metabolism of immunosuppressants MB Arassi, N Karcher, E Mastrorilli, M Gross, A Brauer-Nikonow, ... | | 2024 |
| Metagenomic global survey and in-depth genomic analyses of Ruminococcus gnavus reveal differences across host lifestyle and health status S Nooij, N Plomp, IMJG Sanders, L Schout, AE van der Meulen, ... bioRxiv, 2024.06. 27.600998, 2024 | | 2024 |
| Long-term fasting remodels gut microbial metabolism and host metabolism QR Ducarmon, F Grundler, C Giannopoulou, A Loume, N Karcher, ... bioRxiv, 2024.04. 19.590209, 2024 | | 2024 |
Nicola SegataDepartment CIBIO, University of TrentoVerified email at unitn.it
