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Nicolai Karcher
Nicolai Karcher
Postdoc, EMBL Heidelberg
Verified email at embl.de
Title
Cited by
Cited by
Year
Extensive unexplored human microbiome diversity revealed by over 150,000 genomes from metagenomes spanning age, geography, and lifestyle
E Pasolli, F Asnicar, S Manara, M Zolfo, N Karcher, F Armanini, F Beghini, ...
Cell 176 (3), 649-662. e20, 2019
12292019
Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation
AM Thomas, P Manghi, F Asnicar, E Pasolli, F Armanini, M Zolfo, ...
Nature medicine 25 (4), 667-678, 2019
6902019
The Prevotella copri complex comprises four distinct clades underrepresented in westernized populations
A Tett, KD Huang, F Asnicar, H Fehlner-Peach, E Pasolli, N Karcher, ...
Cell host & microbe 26 (5), 666-679. e7, 2019
3332019
Microbiome meta-analysis and cross-disease comparison enabled by the SIAMCAT machine learning toolbox
J Wirbel, K Zych, M Essex, N Karcher, E Kartal, G Salazar, P Bork, ...
Genome biology 22 (1), 93, 2021
1502021
Variability of strain engraftment and predictability of microbiome composition after fecal microbiota transplantation across different diseases
G Ianiro, M Punčochář, N Karcher, S Porcari, F Armanini, F Asnicar, ...
Nature Medicine 28 (9), 1913-1923, 2022
1182022
Genomic diversity and ecology of human-associated Akkermansia species in the gut microbiome revealed by extensive metagenomic assembly
N Karcher, E Nigro, M Punčochář, A Blanco-Míguez, M Ciciani, P Manghi, ...
Genome biology 22 (1), 209, 2021
862021
Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations
N Karcher, E Pasolli, F Asnicar, KD Huang, A Tett, S Manara, F Armanini, ...
Genome biology 21, 1-27, 2020
842020
Bacterial retrons encode phage-defending tripartite toxin–antitoxin systems
J Bobonis, K Mitosch, A Mateus, N Karcher, G Kritikos, J Selkrig, M Zietek, ...
Nature 609 (7925), 144-150, 2022
692022
Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species
S Manara, F Asnicar, F Beghini, D Bazzani, F Cumbo, M Zolfo, E Nigro, ...
Genome biology 20, 1-16, 2019
572019
Sulfoquinovose is a select nutrient of prominent bacteria and a source of hydrogen sulfide in the human gut
BT Hanson, K Dimitri Kits, J Löffler, AG Burrichter, A Fiedler, K Denger, ...
The ISME journal 15 (9), 2779-2791, 2021
412021
Cultivation-independent genomes greatly expand taxonomic-profiling capabilities of mOTUs across various environments
HJ Ruscheweyh, A Milanese, L Paoli, N Karcher, Q Clayssen, MI Keller, ...
Microbiome 10 (1), 212, 2022
262022
The gut microbiome in solid organ transplantation
M Baghai Arassi, G Zeller, N Karcher, M Zimmermann, B Toenshoff
Pediatric Transplantation 24 (7), e13866, 2020
222020
proGenomes3: approaching one million accurately and consistently annotated high-quality prokaryotic genomes
A Fullam, I Letunic, TSB Schmidt, QR Ducarmon, N Karcher, S Khedkar, ...
Nucleic acids research 51 (D1), D760-D766, 2023
182023
SIAMCAT: user-friendly and versatile machine learning workflows for statistically rigorous microbiome analyses
J Wirbel, K Zych, M Essex, N Karcher, E Kartal, G Salazar, P Bork, ...
bioRxiv, 931808, 2020
122020
Reference genome-independent taxonomic profiling of microbiomes with mOTUs3
HJ Ruscheweyh, A Milanese, L Paoli, N Karcher, Q Clayssen, MI Metzger, ...
bioRxiv, 2021.04. 20.440600, 2021
42021
Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation (vol 25, pg 667, 2019)
AM Thomas, P Manghi, F Asnicar, E Pasolli, F Armanini, M Zolfo, ...
NATURE PUBLISHING GROUP, 2019
12019
Unraveling interindividual differences and functional consequences of gut microbial metabolism of immunosuppressants
M Baghai Arassi, N Karcher, E Mastrorilli, M Gross, A Brauer-Nikonow, ...
bioRxiv, 2024.03. 28.586928, 2024
2024
Unraveling interindividual differences and functional consequences of gut microbial metabolism of immunosuppressants
MB Arassi, N Karcher, E Mastrorilli, M Gross, A Brauer-Nikonow, ...
2024
Long-term fasting remodels gut microbial metabolism and host metabolism
QR Ducarmon, F Grundler, C Giannopoulou, A Loume, N Karcher, ...
bioRxiv, 2024.04. 19.590209, 2024
2024
Large-scale computational analyses of gut microbial CAZyme repertoires enabled by Cayman
QR Ducarmon, N Karcher, HLP Tytgat, O Delannoy-Bruno, S Pekel, ...
bioRxiv, 2024.01. 08.574624, 2024
2024
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