| Temperature-dependence of the single-cell variability in the kinetics of transcription activation in Escherichia coli NSM Goncalves, S Startceva, CSD Palma, MNM Bahrudeen, ... Physical Biology 15 (2), 026007, 2018 | 10 | 2018 |
| Analytical kinetic model of native tandem promoters in E. coli V Chauhan, MNM Bahrudeen, CSD Palma, ISC Baptista, BLB Almeida, ... PLoS Computational Biology 18 (1), e1009824, 2022 | 8 | 2022 |
| Effects of extrinsic noise are promoter kinetics dependent MNM Bahrudeen, S Startceva, AS Ribeiro Proceedings of the 9th International Conference on Bioinformatics and …, 2017 | 8 | 2017 |
| Estimating RNA numbers in single cells by RNA fluorescent tagging and flow cytometry MNM Bahrudeen, V Chauhan, CSD Palma, SMD Oliveira, VK Kandavalli, ... Journal of microbiological methods 166, 105745, 2019 | 7 | 2019 |
| Sequence-dependent model of genes with dual σ factor preference ISC Baptista, V Kandavalli, V Chauhan, MNM Bahrudeen, BLB Almeida, ... Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms 1865 (3), 194812, 2022 | 6 | 2022 |
| Dissecting the in vivo dynamics of transcription locking due to positive supercoiling buildup CSD Palma, V Kandavalli, MNM Bahrudeen, M Minoia, V Chauhan, ... Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms 1863 (5), 194515, 2020 | 5 | 2020 |
| The precision of the symmetry in Z-ring placement in Escherichia coli is hampered at critical temperatures R Neeli-Venkata, SMD Oliveira, L Martins, S Startceva, M Bahrudeen, ... Physical Biology 15 (5), 056002, 2018 | 4 | 2018 |
| Tuning extrinsic noise effects on a small genetic circuit MNM Bahrudeen, AS Ribeiro Artificial Life Conference Proceedings, 454-459, 2017 | 4 | 2017 |
| Alteration of DNA supercoiling serves as a trigger of short-term cold shock repressed genes of E. coli S Dash, CSD Palma, ISC Baptista, BLB Almeida, MNM Bahrudeen, ... Nucleic Acids Research 50 (15), 8512-8528, 2022 | 3 | 2022 |
| Estimating effects of extrinsic noise on model genes and circuits with empirically validated kinetics SMD Oliveira, MNM Bahrudeen, S Startceva, AS Ribeiro Italian Workshop on Artificial Life and Evolutionary Computation, 181-193, 2017 | 2 | 2017 |
| SRSF3 shapes the structure of miR‐17‐92 cluster RNA and promotes selective processing of miR‐17 and miR‐20a M Ratnadiwakara, MNM Bahrudeen, E Aikio, P Takabe, RM Engel, ... EMBO reports 24 (7), e56021, 2023 | 1 | 2023 |
| The transcription factor network of E. coli steers global responses to shifts in RNAP concentration B LB Almeida, MN M. Bahrudeen, V Chauhan, S Dash, V Kandavalli, ... Nucleic Acids Research 50 (12), 6801-6819, 2022 | 1 | 2022 |
| Positive supercoiling buildup is a trigger of E. coli’s short-term response to cold shock S Dash, CSD Palma, ISC Baptista, MNM Bahrudeen, BLB Almeida, ... bioRxiv, 2021.12. 22.473827, 2021 | 1 | 2021 |
| Modeling and Engineering Promoters with Pre-defined RNA Production Dynamics in Escherichia Coli SMD Oliveira, MNM Bahrudeen, S Startceva, V Kandavalli, AS Ribeiro International Conference on Computational Methods in Systems Biology, 3-20, 2018 | 1 | 2018 |
| Estimating the multi-scale effects of extrinsic noise on genes and circuits activity from an empirically validated model of transcription kinetics SMD Oliveira, MM Bahrudeen, S Startceva, AS Ribeiro Italian Workshop on Artificial Life and Evolutionary Computation, 2017 | 1 | 2017 |
| Regulatory Mechanisms of Gene Transcription in Escherichia Coli MM Bahrudeen | | 2023 |
| Continuous step model of expression of genes controlled by closely spaced tandem promoters MM Bahrudeen, V Chauhan, AS Ribeiro Physics Meets Biology 2021, 2021 | | 2021 |
| Promoters proximity as a regulatory mechanism in single cell protein numbers statistics V Chauhan, MM Bahrudeen, BL de Brito Almeida, AS Ribeiro EMBL Conference: From Functional Genomics to Systems Biology, 2020 | | 2020 |
| Regulatory mechanisms of the dynamics of closely spaced promoters in E. coli CSD Palma, MNM Bahrudeen, V Chauhan, I Baptista, S Dash, B Almeida, ... The 1st International BioDesign Research Conference, 2020 | | 2020 |
| Genome-wide responses of Escherichia coli to changing RNA polymerase concentrations BL de Brito Almeida, IC Baptista, CSD Palma, V Kandavalli, ... Congress of microbiology and biotechnology 2019 (Microbiotec’19), 2019 | | 2019 |
